PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485421.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 680aa MW: 77780.5 Da PI: 7.9445

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.3e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_004485421.1 63 EFYSDFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKSSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 156 6************9998877356667999*********9999999****************9988888************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.273	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-6	561	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-5	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MMSEEAGSML VVYDDPSDQH SLSLGETSST EESPGETRHS MESTNDAIPY TGQRFATHDA 60 AYEFYSDFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKSST ESKPQRNRKS 120 SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDADKNRILM 180 FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK 240 EKDSNFKFEH TLDANNHLEN IAWSYASSIQ LYDIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CVLLRDETVR SFSWAIKAFL GFMNGKAPQT ILTDQNICLK EALSAEMPTT 360 KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFELGWRE MVCSFALHSN 420 RHMVNLYSSR SLWALPYLRS HFLAGMTTTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQTGEQQ TMQQNLQNVS LKTGAPMESH AATVLTPFAF SKLQEQLVLA AHYASFSIEE 540 GFLVRHHTKA EGGRKVYWSP QEGIISCSCH QFEFSGILCR HSLRVLSTGN CFQIPDRYLP 600 IRWRRISIPS SKLLQNATND HAERLKLLQN MVSSLITESS KSKERLDIAT EQVSILLSRI 660 REQPISLQCA RDISTINRNL

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MMSEEAGSML VVYDDPSDQH SLSLGETSST EESPGETRHS MESTNDAIPY TGQRFATHDA  60
AYEFYSDFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKSST ESKPQRNRKS  120
SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDADKNRILM  180
FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK  240
EKDSNFKFEH TLDANNHLEN IAWSYASSIQ LYDIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CVLLRDETVR SFSWAIKAFL GFMNGKAPQT ILTDQNICLK EALSAEMPTT  360
KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFELGWRE MVCSFALHSN  420
RHMVNLYSSR SLWALPYLRS HFLAGMTTTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQTGEQQ TMQQNLQNVS LKTGAPMESH AATVLTPFAF SKLQEQLVLA AHYASFSIEE  540
GFLVRHHTKA EGGRKVYWSP QEGIISCSCH QFEFSGILCR HSLRVLSTGN CFQIPDRYLP  600
IRWRRISIPS SKLLQNATND HAERLKLLQN MVSSLITESS KSKERLDIAT EQVSILLSRI  660
REQPISLQCA RDISTINRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485421.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485421.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_004485422.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S2XBK3	0.0	A0A1S2XBK3_CICAR; protein FAR1-RELATED SEQUENCE 11
STRING	XP_004485421.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]