PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00031789-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YA

Protein Properties

Length: 346aa MW: 37783.4 Da PI: 7.2411

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00031789-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101	1.1e-31	175	231	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+R+sgGrF WALNUT_00031789-RA 175 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARASGGRF 231 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.7E-35	173	234	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.584	174	234	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-27	176	231	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.3E-23	177	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	179	199	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.3E-23	208	231	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MQQKSEKPNR LDPRSHAIQP PAVYTEPWWR NIGYNPISPA VTGGNVSNSS SLECPDAGSD 60 SNDGQSLSNN EPNEEGDDAT KESQNTASSR SAGNYGQHHQ NMQHVASTAP SMRNECLTQP 120 AQLELVGHSI ACASNPYQDP YHGGMLAAYG HQPYGYPPFL GMPHARMPLP LEMAQEPVYV 180 NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHQHA MRRARASGGR FAKKSNVDAA 240 NHEAKEKGIA SGPALSSQSA SSSGSEPLLT DSAEIWNSSH GQQEGRQDAS EAQNYVNGDN 300 CYQNHEVLPV SSYLHMGGRG EEGDCSGQQW GSISSNQASQ RRLAIQ

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MQQKSEKPNR LDPRSHAIQP PAVYTEPWWR NIGYNPISPA VTGGNVSNSS SLECPDAGSD  60
SNDGQSLSNN EPNEEGDDAT KESQNTASSR SAGNYGQHHQ NMQHVASTAP SMRNECLTQP  120
AQLELVGHSI ACASNPYQDP YHGGMLAAYG HQPYGYPPFL GMPHARMPLP LEMAQEPVYV  180
NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHQHA MRRARASGGR FAKKSNVDAA  240
NHEAKEKGIA SGPALSSQSA SSSGSEPLLT DSAEIWNSSH GQQEGRQDAS EAQNYVNGDN  300
CYQNHEVLPV SSYLHMGGRG EEGDCSGQQW GSISSNQASQ RRLAIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-17	175	239	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857497.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_018857498.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_018857499.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Swissprot	Q9LXV5	2e-87	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A2I4HMV8	0.0	A0A2I4HMV8_JUGRE; nuclear transcription factor Y subunit A-1-like isoform X1
STRING	XP_008227314.1	1e-166	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4012	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	2e-85	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]