PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031734-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 322aa    MW: 36225.4 Da    PI: 6.2529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031734-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.8e-14147192454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f+eLr ++P        +++Ka+ L  Av YI++L
  WALNUT_00031734-RA 147 NHVEAERQRRENMNHWFDELRAVVPIV-----SRMDKASLLLDAVSYINEL 192
                         799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-8139IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.298143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-17144210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-13146196No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15147210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MHGIETFICI PTSTGVLEMG SPIIIRENRG LVQQAKSLFG RDLTGLVPRQ PSPNLVPIQF  60
LDRNISFADI GITNSIQEED KYSDQLEKKG VIEAKKADCI NGGQSSYLYS EHVSDSDRPV  120
IFVNMIEKKT PKKKGRKPKL GRDTPLNHVE AERQRRENMN HWFDELRAVV PIVSRMDKAS  180
LLLDAVSYIN ELKTKIDELE LEFQSKPKEA GKLEHVDTID NQSSTTTTTS VNHIPRSNSS  240
EFGLKVEVKI IGHDAMIRVH SENCNYPTAQ LMVALRDLEF QVLHASIACV EELMLQDVVV  300
RVPDGLNTEE SLKVALLEKL KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-21140202163Transcription factor MYC2
5gnj_B2e-21140202163Transcription factor MYC2
5gnj_E2e-21140202163Transcription factor MYC2
5gnj_F2e-21140202163Transcription factor MYC2
5gnj_G2e-21140202163Transcription factor MYC2
5gnj_I2e-21140202163Transcription factor MYC2
5gnj_M2e-21140202163Transcription factor MYC2
5gnj_N2e-21140202163Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815973.10.0PREDICTED: transcription factor MYC2-like, partial
TrEMBLA0A2I4E9920.0A0A2I4E992_JUGRE; transcription factor MYC2-like
STRINGEOX956141e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-43bHLH family protein