PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031458-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 391aa    MW: 45414 Da    PI: 8.4037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031458-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-066484323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ Cg  Fs + +Lk+H+++H
  WALNUT_00031458-RA 64 CSECGAAFSKPAYLKQHMQSH 84
                        *******************99 PP
2zf-C2H218.74.8e-0690114123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+Cp  dC+ s++rk++L+rH+  H
  WALNUT_00031458-RA  90 YTCPvdDCHSSYRRKDHLTRHLLQH 114
                         9********************9887 PP
3zf-C2H217.61e-05119144123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp  +C+  Fs + n+krH++  H
  WALNUT_00031458-RA 119 FKCPieKCNLEFSFQGNMKRHMKEfH 144
                         89*********************988 PP
4zf-C2H216.81.9e-05159183123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y C    Cgk+F+  s L++H  +H
  WALNUT_00031458-RA 159 YICLeiGCGKVFRFASKLQKHVESH 183
                         7899999**************9998 PP
5zf-C2H219.72.2e-06275299223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C ++Fs+ksnL++H++  H
  WALNUT_00031458-RA 275 KCNykGCLQTFSNKSNLRQHMKAvH 299
                         79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355301840IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.12E-1162114No hitNo description
PROSITE profilePS5015713.7136289IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-86383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-1284116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003290114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.68190119IPR007087Zinc finger, C2H2
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6100158No hitNo description
Gene3DG3DSA:3.30.160.607.5E-5117141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64119149IPR007087Zinc finger, C2H2
SMARTSM003550.036119144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-6157185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012159183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118159183IPR007087Zinc finger, C2H2
PROSITE patternPS000280161183IPR007087Zinc finger, C2H2
SMARTSM0035515216241IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
SMARTSM003558.3244265IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.47E-9256312No hitNo description
Gene3DG3DSA:3.30.160.601.6E-6257296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.0E-4274299IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217274304IPR007087Zinc finger, C2H2
PROSITE patternPS000280276299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-5298328IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.2305331IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEEIGEMEKP IFRDIRRYFC DFCGICRSKK SLITSHILAH HKEEMGEIEV DGEDKIEGNK  60
SNACSECGAA FSKPAYLKQH MQSHSLERPY TCPVDDCHSS YRRKDHLTRH LLQHLGKLFK  120
CPIEKCNLEF SFQGNMKRHM KEFHREDCSS PDAECQKQYI CLEIGCGKVF RFASKLQKHV  180
ESHGKLPCFP DSKFFNYVCI FPPLLFWQFK LDSVEAFCSE PGCMNYFAND KCLKAHIQSC  240
HQHITCEICG TRQLRKNFKR HQRTHESAGS MERIKCNYKG CLQTFSNKSN LRQHMKAVHL  300
ELKPFACSFS GCGMRFAHKH VRDNHEKTGN HVYTLGDFEE SDERFQSRPK GGRKRKYPTV  360
EMLIRKRVTP PSQSEEGSAC LAWLLAQTTE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A6e-156519118167PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D6e-156519118167PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355RPKGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808579.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-137TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2I4DN520.0A0A2I4DN52_JUGRE; transcription factor IIIA-like
STRINGXP_008339227.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-140transcription factor IIIA