PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030882-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 691aa MW: 79987.1 Da PI: 6.1475

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030882-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHe WALNUT_00030882-RA 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPMKKKPTGEHHRDRKSVRCGCDAKMYLSKEIvegVSQWFVVQFSNVHNHE 157 59******************8888.**************************************998767889*********** PP FAR1 89 la 90 l WALNUT_00030882-RA 158 LL 159 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-19	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-6	571	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-5	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MTSVPSKNIW IRRQQCPCGD WKCYVAYEGD AEETSIASQL IKNDTLPLDA MVSPYVGMIF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPMK KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEIVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKLVQEN DALLTEKRET 240 DTMELLEACK ATKETDEDFV YDFTVDENDK VENIAWSYGD SVHAYTMFGD VLYFDTSYRS 300 ITYGMLFGAW LGIDNHGRTI FFGCVLLQDE TPRSFSWALQ SFVQFMRGRC PQTILTDLDP 360 GLRDAIRSEL PGTKHVTSIW NIFSKLPSWF SLPLGSRYGE FKSEFDDLYN MDSVDGFELR 420 WNQMVSMFGL GSDKHIALLF SFRTCWALSY MRGYFLAQMA TQAYSKSVDA FLKGVFSAQT 480 CLRSFFEQVG ISANFQNHAR LELQYMHLKT CIPIEENARS ILTPFAFNAL QNELVLAMQY 540 ATSEMANGSY IVRHFKKMDV ERLVIWIPED EQVHCSCKEY ESSGILCRHA LRVVIVKNYF 600 QLPDKYFPSR WRREISPVVY ENNATQNGED EWFREYQCLS ETVFAESSIT KERSDYVRSE 660 LTKELARLLN EVRNLPETDV VAMGLTLSPT C

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MTSVPSKNIW IRRQQCPCGD WKCYVAYEGD AEETSIASQL IKNDTLPLDA MVSPYVGMIF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPMK KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEIVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKLVQEN DALLTEKRET  240
DTMELLEACK ATKETDEDFV YDFTVDENDK VENIAWSYGD SVHAYTMFGD VLYFDTSYRS  300
ITYGMLFGAW LGIDNHGRTI FFGCVLLQDE TPRSFSWALQ SFVQFMRGRC PQTILTDLDP  360
GLRDAIRSEL PGTKHVTSIW NIFSKLPSWF SLPLGSRYGE FKSEFDDLYN MDSVDGFELR  420
WNQMVSMFGL GSDKHIALLF SFRTCWALSY MRGYFLAQMA TQAYSKSVDA FLKGVFSAQT  480
CLRSFFEQVG ISANFQNHAR LELQYMHLKT CIPIEENARS ILTPFAFNAL QNELVLAMQY  540
ATSEMANGSY IVRHFKKMDV ERLVIWIPED EQVHCSCKEY ESSGILCRHA LRVVIVKNYF  600
QLPDKYFPSR WRREISPVVY ENNATQNGED EWFREYQCLS ETVFAESSIT KERSDYVRSE  660
LTKELARLLN EVRNLPETDV VAMGLTLSPT C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857519.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2I4HMY1	0.0	A0A2I4HMY1_JUGRE; Uncharacterized protein
STRING	XP_008227430.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]