PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030707-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 590aa    MW: 65712 Da    PI: 6.819
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030707-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.6e-085095471854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  WALNUT_00030707-RA 509 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 547
                         5887779******************************88 PP
2BELL79.16.1e-26380449171
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         +r+ +++kk++Ll+ll+ Vd++Y+q+v++++tvis+F+a+++l++ ++++++Al+++S+ +++L+++i++ 
  WALNUT_00030707-RA 380 QRRTVEAKKTQLLTLLQVVDDQYNQCVDEIHTVISAFHAATELDP-QIHARFALQTVSFLYKNLRERISNY 449
                         578899***************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-27302448IPR006563POX domain
PfamPF075264.2E-26307447IPR006563POX domain
PROSITE profilePS5007111.029488551IPR001356Homeobox domain
CDDcd000869.21E-11491552No hitNo description
SMARTSM003896.9E-6491555IPR001356Homeobox domain
SuperFamilySSF466892.78E-15493560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-26494557IPR009057Homeodomain-like
PfamPF059209.5E-15508547IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MMENNLCIVP TDMGSRSPVV IDGFLPRTTS NTLMQYNSFD LNNQNHIMTG FPVLSGLQGE  60
PMNGLHTNLH TPNVERVVDS NALVTLLGRN AARDASLCNS RLTGNTQFQD QAAGGAAIAA  120
ASHATFLAAK FGLQENLNNL AILAPSICPL DVLGTYASNG CSNASFATSL SCGYEDVLGN  180
ANTKWDTKYP TPLELVGKSP VRAEPQPYSS TASIIPDGWM SSHSGNVMAN APCSSSNFNN  240
ELSLTLATSE PSVLNEINIP DQCSEMGMSG VTRHCLNETT LSSEQTCNSK ELSVSFGSHR  300
SPEFSQVILG SRYLHAIQEI LAQIANYSLE NLDHMSYPTA WNEAGSNIPF TSSFPAERWM  360
SSTVPDVDGG LELQMEFTLQ RRTVEAKKTQ LLTLLQVVDD QYNQCVDEIH TVISAFHAAT  420
ELDPQIHARF ALQTVSFLYK NLRERISNYI LAMGAHFNST CKKEKKRSFE TSFIQKQWAL  480
QQLKSKDHQL WRPQRGLPER SVSVLRAWMF QNFLHPYPKD AEKHLLAVKS GLTRSQVSNW  540
FINARVRLWK PMIEEMYAEM NRRKLQRDEE GTQANHRNHV SINNHRFNST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14497555563Homeobox protein Meis2
3k2a_B2e-14497555563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859168.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859169.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859170.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859171.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859172.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859173.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859174.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859175.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859176.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859177.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_018859178.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487311e-117ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2I4HSQ20.0A0A2I4HSQ2_JUGRE; homeobox protein ATH1-like
STRINGEOY298800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-109homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]