PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030707-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TALE | ||||||||
Protein Properties | Length: 590aa MW: 65712 Da PI: 6.819 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.9 | 1.6e-08 | 509 | 547 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + WALNUT_00030707-RA 509 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 547 5887779******************************88 PP | |||||||
2 | BELL | 79.1 | 6.1e-26 | 380 | 449 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +r+ +++kk++Ll+ll+ Vd++Y+q+v++++tvis+F+a+++l++ ++++++Al+++S+ +++L+++i++ WALNUT_00030707-RA 380 QRRTVEAKKTQLLTLLQVVDDQYNQCVDEIHTVISAFHAATELDP-QIHARFALQTVSFLYKNLRERISNY 449 578899***************************************.**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-27 | 302 | 448 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-26 | 307 | 447 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.029 | 488 | 551 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.21E-11 | 491 | 552 | No hit | No description |
SMART | SM00389 | 6.9E-6 | 491 | 555 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-15 | 493 | 560 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-26 | 494 | 557 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.5E-15 | 508 | 547 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MMENNLCIVP TDMGSRSPVV IDGFLPRTTS NTLMQYNSFD LNNQNHIMTG FPVLSGLQGE 60 PMNGLHTNLH TPNVERVVDS NALVTLLGRN AARDASLCNS RLTGNTQFQD QAAGGAAIAA 120 ASHATFLAAK FGLQENLNNL AILAPSICPL DVLGTYASNG CSNASFATSL SCGYEDVLGN 180 ANTKWDTKYP TPLELVGKSP VRAEPQPYSS TASIIPDGWM SSHSGNVMAN APCSSSNFNN 240 ELSLTLATSE PSVLNEINIP DQCSEMGMSG VTRHCLNETT LSSEQTCNSK ELSVSFGSHR 300 SPEFSQVILG SRYLHAIQEI LAQIANYSLE NLDHMSYPTA WNEAGSNIPF TSSFPAERWM 360 SSTVPDVDGG LELQMEFTLQ RRTVEAKKTQ LLTLLQVVDD QYNQCVDEIH TVISAFHAAT 420 ELDPQIHARF ALQTVSFLYK NLRERISNYI LAMGAHFNST CKKEKKRSFE TSFIQKQWAL 480 QQLKSKDHQL WRPQRGLPER SVSVLRAWMF QNFLHPYPKD AEKHLLAVKS GLTRSQVSNW 540 FINARVRLWK PMIEEMYAEM NRRKLQRDEE GTQANHRNHV SINNHRFNST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 497 | 555 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 497 | 555 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859168.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859169.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859170.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859171.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859172.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859173.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859174.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859175.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859176.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859177.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_018859178.1 | 0.0 | PREDICTED: homeobox protein ATH1-like | ||||
Swissprot | P48731 | 1e-117 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2I4HSQ2 | 0.0 | A0A2I4HSQ2_JUGRE; homeobox protein ATH1-like | ||||
STRING | EOY29880 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 1e-109 | homeobox gene 1 |
Publications ? help Back to Top | |||
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