PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00029797-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27362.9 Da PI: 9.6422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl WALNUT_00029797-RA 14 KGAWSKQEDQKLIDYIQTHGEGSWSSLPKAAGLDRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00029797-RA 67 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 111 899*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.885 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.655 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRKPCSKQEG TNNKGAWSKQ EDQKLIDYIQ THGEGSWSSL PKAAGLDRCG KSCRLRWINY 60 LRPDIKRGNF GQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HIRRKLISMG 120 IDPNNHRLNQ QINPPRPQPK YVNVVSVAAT TSSESTNYDH DCKPPPLKSV GNADHRVSDG 180 TASSSVDQDE MPAANSLALN LDLTIAFRPS PVTQLVQEKR QSSISMSTKQ VEREPVLVPT 240 LLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018817041.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_018853260.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_018856087.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_018859205.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9SZP1 | 2e-71 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2I4HST4 | 0.0 | A0A2I4HST4_JUGRE; transcription repressor MYB6-like | ||||
STRING | XP_008229231.1 | 1e-102 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-71 | myb domain protein 3 |