PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028918-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | DBB | ||||||||
Protein Properties | Length: 301aa MW: 33035.1 Da PI: 6.7127 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC+ ++ lC+ C H+ H+ WALNUT_00028918-RA 4 QCDVCDKDEASVFCTADEAALCDACDHRVHHAnklaskHQ 43 7******99*******************964446666676 PP | |||||||
2 | zf-B_box | 27.3 | 7.5e-09 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++e ++ lfC++++ lC++C + +H H WALNUT_00028918-RA 54 QVPLCDVCQERRAFLFCQQDRAILCRECDFPIHTAndltrkH 95 6789***************************99545555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.993 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.87E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.9E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.04 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.8E-16 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-6 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MKIQCDVCDK DEASVFCTAD EAALCDACDH RVHHANKLAS KHQRFSLLHP SSKQVPLCDV 60 CQERRAFLFC QQDRAILCRE CDFPIHTAND LTRKHNRFLL TGVKLSATSN VYTSSSSTTV 120 VSTNSHDSVP NHHKSQPVNT KNSVAAPIST SQPPLLAKNS ASNTSTTALV SDKGGENFPT 180 DQTSSISEYL IETLPGWHVE DFLDSTSAPF GFCKSDDCVL PFLDAGLDQI NTDTFSPDIS 240 FGIWVPQQPA ALCPPQLAGF KEKKEATTLK LNRSRCMDDG FTVPQISPPS STGPKRSRLF 300 W |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812557.1 | 0.0 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 5e-89 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2I4DZI8 | 0.0 | A0A2I4DZI8_JUGRE; B-box zinc finger protein 21-like | ||||
STRING | VIT_18s0001g13520.t01 | 1e-123 | (Vitis vinifera) | ||||
STRING | EOY14910 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 4e-77 | salt tolerance homolog2 |