PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027680-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 392aa    MW: 45624.2 Da    PI: 8.4632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027680-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-066484323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ Cg  Fs + +Lk+H+++H
  WALNUT_00027680-RA 64 CSECGAAFSKPAYLKQHMQSH 84
                        *******************99 PP
2zf-C2H218.74.8e-0690114123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+Cp  dC+ s++rk++L+rH+  H
  WALNUT_00027680-RA  90 YTCPvdDCHSSYRRKDHLTRHLLQH 114
                         9********************9887 PP
3zf-C2H216.13.2e-05119144123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp   C+  Fs + n+krH++  H
  WALNUT_00027680-RA 119 FKCPieRCNLEFSFQGNMKRHMKEfH 144
                         89*********************988 PP
4zf-C2H215.84e-05159183123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y C    Cgk+F+  s L++H  +H
  WALNUT_00027680-RA 159 YICLerGCGKVFRFASKLRKHEESH 183
                         7899999**************9988 PP
5zf-C2H219.72.2e-06276300223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C ++Fs+ksnL++H++  H
  WALNUT_00027680-RA 276 KCNykGCLQTFSNKSNLRQHMKAvH 300
                         79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355301840IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.36E-1162114No hitNo description
PROSITE profilePS5015713.7136289IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-86383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-1284116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003290114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.68190119IPR007087Zinc finger, C2H2
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SuperFamilySSF576672.64E-6100158No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4117141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.556119149IPR007087Zinc finger, C2H2
SMARTSM003550.05119144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-7157185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388159183IPR007087Zinc finger, C2H2
SMARTSM003550.027159183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161183IPR007087Zinc finger, C2H2
SMARTSM0035515217242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
SMARTSM003558.3245266IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.44E-9257313No hitNo description
Gene3DG3DSA:3.30.160.602.2E-6258297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.217275305IPR007087Zinc finger, C2H2
SMARTSM003552.0E-4275300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5299329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.2306332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280308332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEEIGEMEKP IFRDIRRYFC DFCGICRSKK SLITSHILAH HKEEMGEIEV DGEDKIEGNK  60
SNACSECGAA FSKPAYLKQH MQSHSLERPY TCPVDDCHSS YRRKDHLTRH LLQHLGKLFK  120
CPIERCNLEF SFQGNMKRHM KEFHREDCSS PDAECQKQYI CLERGCGKVF RFASKLRKHE  180
ESHGKLPCFP DSKFFNYVCI FPPLLFVWQF KLDSVEAFCS EPGCMNYFAN DKCLKAHIQS  240
CHQHITCEIC GTRQLRKNFK RHQRTHESAG SLERIKCNYK GCLQTFSNKS NLRQHMKAVH  300
LELKPFACSF SGCGMRFAHK HVRDNHEKTG NHVYTLGDFE ESDERFQSRP KGGRKRKYPT  360
VEMLIRKRVT PPSQSEEGSA CLAWLLAQTT ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-166519118167PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-166519118167PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348356RPKGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850673.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-136TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2I4H3F10.0A0A2I4H3F1_JUGRE; transcription factor IIIA-like
STRINGXP_008339227.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-138transcription factor IIIA