PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024530-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38607.5 Da PI: 6.6054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 177 | 223 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq WALNUT_00024530-RA 177 DHVMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 223 599************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.377 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 177 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-17 | 178 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 178 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-12 | 178 | 227 | No hit | No description |
SMART | SM00353 | 8.9E-15 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEISSANWIS EVGVEDPIFM HQYDMNSFDY SILDELNFES LSAESYSSYP DLNPKSAHSF 60 NGSAIENPHT GLESPAKQLK TSSWNSCTTD RMTSMAASSS SSKLISFENS NSAPATSQKF 120 LDCTVKPKNE AGSDLRNMNF PTMISESSLE IQNGSSKHEQ DPKRVGTVTR TPLHARDHVM 180 AERKRREKLS QRFIALSAIV PGLKKMDKAS VLGDAIKYLK QLQERVKILE EQAAMKTTKS 240 VVSVKKARLS ADDDISSSDD NSDSHSEHPL PEIEARVSGK NVLIRIHCDK SKGCAAKILS 300 ETEKLDLTII SSNVLPFGNS TLNVTVVAQM DDDFCITAKD LVRNLRRALA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-13 | 177 | 232 | 8 | 63 | Transcription factor MYC2 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 186 | ERKRRE |
2 | 182 | 187 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813765.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A2I4E2Z0 | 0.0 | A0A2I4E2Z0_JUGRE; transcription factor bHLH18-like | ||||
STRING | cassava4.1_010938m | 1e-139 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 3e-50 | bHLH family protein |