PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022886-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YA

Protein Properties

Length: 285aa MW: 31334.6 Da PI: 9.5635

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022886-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	2e-31	139	195	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVN+KQy++Il+RRq+Ra+le+++k+ k+rkpylheSRh+hAl+R RgsgGrF WALNUT_00022886-RA 139 DGPIYVNPKQYHGILRRRQSRARLEAKTKV-VKTRKPYLHESRHRHALNRVRGSGGRF 195 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.7E-34	137	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.114	138	198	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-23	141	163	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-27	141	195	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-23	172	195	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0009785	Biological Process	blue light signaling pathway
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MPRFTANCPL WWNSDVHRIP PALSENACLK AGSPPQLCHD AKHLGLQLPI QESTTNQLTG 60 QFHPKAGAAG GSNSQDQCIS SESGIYALRC TISSVTCLCR AMLVDYLQTT SYCKFRQIQP 120 EMVGRVSARV PLPLDFSDDG PIYVNPKQYH GILRRRQSRA RLEAKTKVVK TRKPYLHESR 180 HRHALNRVRG SGGRFVSTRK LHNPDPAATD LLSSKTMSEF DSDRFAAGQD TTCSNITLIS 240 NINDNNTFQL RDPRLSGISP LMGGSMQCNG GLVSGGTQHC ASVVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	141	208	4	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018813506.1	1e-180	PREDICTED: nuclear transcription factor Y subunit A-3-like
Refseq	XP_018813507.1	1e-180	PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBL	A0A2I4E282	1e-179	A0A2I4E282_JUGRE; nuclear transcription factor Y subunit A-3-like
STRING	POPTR_0006s14740.1	5e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	4e-34	nuclear factor Y, subunit A5