PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020845-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 28254.2 Da PI: 7.7793 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H WALNUT_00020845-RA 85 YKCTVCDKAFPSYQALGGHKASH 107 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0067 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-13 | 85 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.95E-10 | 85 | 107 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.95E-10 | 138 | 165 | No hit | No description |
Pfam | PF13912 | 1.6E-13 | 142 | 167 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MALEALNSPT TATPFNYELD DVERQYAEPW TKRKRSKRPG RVETEEEYLA LCLIMLARGG 60 TTSDITSQTQ QKQSPPQPPA LKLSYKCTVC DKAFPSYQAL GGHKASHRKS SEAATAKITA 120 NDNNHPSTSS SSGTAAGTSG KTHECSICHK TFPTGQALGG HKRCHYDGGN SHSNTNANAN 180 TNTNTNTNTN ANSGVTFSEG GGSSLCQSHR GFDLNLPALP EFWLDRKSSQ LCAEQEVESP 240 LPTKKPRLFL MSPDDVVSFQ D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852122.1 | 0.0 | PREDICTED: zinc finger protein ZAT10-like | ||||
TrEMBL | A0A2I4H7J4 | 0.0 | A0A2I4H7J4_JUGRE; zinc finger protein ZAT10-like | ||||
STRING | XP_008236445.1 | 3e-83 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-53 | salt tolerance zinc finger |