PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020075-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 1536aa    MW: 172501 Da    PI: 8.826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020075-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001614211446123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          ++C    C++sF +k +L  H r+ +
  WALNUT_00020075-RA 1421 FVCDieGCTMSFGSKQELAWHKRNiC 1446
                          899999****************9877 PP
2zf-C2H212.80.0003614461468323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          Cp   Cgk F ++ +L++H r+H
  WALNUT_00020075-RA 1446 CPvkGCGKKFFSHKYLVQHRRVH 1468
                          9999*****************99 PP
3zf-C2H212.50.0004615041530123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C+   Cg++F+  s++ rH r+  H
  WALNUT_00020075-RA 1504 YVCGepGCGQTFRFVSDFSRHKRKtgH 1530
                          89********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-161960IPR003349JmjN domain
PROSITE profilePS5118314.6032061IPR003349JmjN domain
PfamPF023752.8E-142154IPR003349JmjN domain
SMARTSM005582.0E-49190359IPR003347JmjC domain
PROSITE profilePS5118432.895193359IPR003347JmjC domain
SuperFamilySSF511971.65E-25206373No hitNo description
PfamPF023733.7E-36223342IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.4E-414141443IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551914211443IPR015880Zinc finger, C2H2-like
SMARTSM003550.004514441468IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.44514441473IPR007087Zinc finger, C2H2
SuperFamilySSF576676.45E-614441480No hitNo description
PROSITE patternPS00028014461468IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-514461472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.4E-714731498IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.63714741503IPR007087Zinc finger, C2H2
SMARTSM003550.001714741498IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014761498IPR007087Zinc finger, C2H2
SuperFamilySSF576673.13E-914841528No hitNo description
Gene3DG3DSA:3.30.160.605.3E-914991527IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.5415041530IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.11515041535IPR007087Zinc finger, C2H2
PROSITE patternPS00028015061530IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1536 aa     Download sequence    Send to blast
MGASEATQEV LSWLKSLPLA PEYHPTLAEF QDPISYIFKI EKEASKYGIC KIVPPVPSSP  60
KKTAIANLNR SLAARNPGAD PKSLPTFTTR QQQIGFCPRK QRAVQRPVWE SGEYYTFQKF  120
EAKAKAFEKS HLKKCCKRGT TPSALDIETL YWKATVDQPF SVEYANDMPG SAFVPFSPKK  180
SREAGWDGVT LGETAWNMRG VSRSNGSLLR FMKEEIPGVT SPMVYVAMMF SWFAWHVEDH  240
DLHSLNYLHM GAGKTWYGVP REAAVAFEEV VRVHGYGGEI NPLVTFATLG EKTTVMSPEI  300
FISAGVPCCR LVQNAGEFVV TFPRAYHTGF SHGFNCGEAA NIATPEWLRV AKDAAIRRAS  360
INYPPMVSHF QLLYDLALAL CSRIPVGIHE PRSSRLKDKK KGEGETMVKE LFVQDVVQNN  420
DLLHILGKGS SVVLLPHSSS DISVCSKLRV GSHLRVNPRL TPGLCSSKEV VKMKSSSLVS  480
DDLVQDRNGE MGQTKGFFPV KGNFFSLYER NKLYSLSGFN NRCPLNSKTL DTDSERGSTI  540
QGDGLSDQRL FSCVTCGILS FACVAIIRPT EPASRYLMSA DCSFFNDWVV GSGITSNGFT  600
SAKGDAITYY QNAGTGWMEK SIPDGLYDVP AQPGNYQIQM ADQLYEVVST TESQRNASAL  660
GLLALNYGNS SDSEEDQDEP NSDGRSKDEP DFPSRADETK SINCSSESLH QCDNYSSKNK  720
IYQCDNSHWP PMQDCSHNAT GVLSLPSSRC GGEDVPSPQT FDRYAQCGRQ VANLNDGSHQ  780
TSDRSVEFRT DDLASTKSIE LMDTCSDPMT LLNITSDHSP CAHDAAKTKL GKAIAPIENT  840
NMSLAPRSDE DSSRMHVFCL EHAVEVEKQL RPIGGVDILL LCHPEYAKIE AEAKLLAEEL  900
GIDCHWNDIT FRNATKEDEN RIQSALDSQE AIHGNGDWAV KLGINLFYSA NLSRSTLYCK  960
QMPYNFVIYN AFGRSAPASS PRKRNVCRRR SGRQKKVVAG KWCGKVWMSH QVHPFLVKGN  1020
PDHGEEEEDE EEEEEEEEER SLQTGTVPDE KLDRKSESNL KHGATTVRKY SRKRKMTVES  1080
GSTKKTKCID REDAVSDYSA EDNYLQQHRR TLRGKPNKSI KRDDSVSDDS LNNNFHQLQR  1140
RSSKITEVFS DERENVVNDS LVHNSHQQRR RIISGKRPKC FERDDAISDG SLGNNAHQRS  1200
RKVTKSKIAK EAFSDDSMEV NSDQRIRRRS RSRAKCIERE DGASDDSFGD ISHHQCRRLP  1260
KIKKAKGIER EGEVVDILRS NSHRQHQRII RDKQMKPETR QQMKKQTSLL VKQVDSRAIK  1320
QVTCQPMKKG TPQQMKQQTP RQRNNQSDQN TSRLGLNAEE DLEGGPSTRL RQRTPKPHKK  1380
TEAKAKEKQQ PSRKKVKKNA SAVKALAGNN DPKAGHEEAE FVCDIEGCTM SFGSKQELAW  1440
HKRNICPVKG CGKKFFSHKY LVQHRRVHMD DRPLRCPWKG CKMTFKWAWA RTEHIRVHTG  1500
ARPYVCGEPG CGQTFRFVSD FSRHKRKTGH SAKKGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-75113806353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-75113806353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110701075SRKRKM
213831394KAKEKQQPSRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807492.10.0PREDICTED: lysine-specific demethylase REF6-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2I4DK340.0A0A2I4DK34_JUGRE; lysine-specific demethylase REF6-like
STRINGXP_008239384.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]