PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019525-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

AP2

Protein Properties

Length: 502aa MW: 55756.9 Da PI: 7.4027

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019525-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.2	3.6e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g WALNUT_00019525-RA 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208 78*****************......55**********************998 PP
2	AP2	41.1	4.4e-13	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g WALNUT_00019525-RA 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 301 89******.7**5553..2.26******99********99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.3E-9	159	208	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.51E-16	159	218	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.82	160	216	IPR001471	AP2/ERF domain
CDD	cd00018	1.46E-11	160	218	No hit	No description
SMART	SM00380	5.9E-32	160	222	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.3E-17	160	216	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-8	251	301	IPR001471	AP2/ERF domain
CDD	cd00018	5.69E-25	251	311	No hit	No description
SuperFamily	SSF54171	4.71E-17	251	311	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.725	252	309	IPR001471	AP2/ERF domain
SMART	SM00380	9.2E-33	252	315	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.8E-16	252	310	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-6	253	264	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-6	291	311	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MLDLNLSVGS ADSASDSVEM VREKILRLSG SPKESSGSFN SSVVSAGDED STSNYCDAAF 60 AYSFGILKDN RSISPGEELD KCDRTIQLFP VSRAGEGEAD VSRSRLGLGK SSRQEWTGFT 120 SSYGGMGAEH RMAAQQQRGE QQQRPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD RAAIKFRGLD ADINFNISEY DEDIKHMSNF SKEEFVHILR 240 RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN 300 GRDAVTNFEL STYEEEIIPE ADNDCNQNLD LQLGMAPPSF SNVGKENNTD ASSFHLQRGW 360 DEMPFDRRPR IENTASETVR IQVPHGPANA SEHPLLWSGA NSSFFSIYKE KAMEKRMEVE 420 SSPCWPSQTC GPFGGATQVP LFSAAASSGF PSTTTSYPSA AVGQLHLPNT TIHPPPFFAI 480 NHPHYHHVPF PLQELKSVPG RT

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MLDLNLSVGS ADSASDSVEM VREKILRLSG SPKESSGSFN SSVVSAGDED STSNYCDAAF  60
AYSFGILKDN RSISPGEELD KCDRTIQLFP VSRAGEGEAD VSRSRLGLGK SSRQEWTGFT  120
SSYGGMGAEH RMAAQQQRGE QQQRPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGLD ADINFNISEY DEDIKHMSNF SKEEFVHILR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR AYDKAAIKCN  300
GRDAVTNFEL STYEEEIIPE ADNDCNQNLD LQLGMAPPSF SNVGKENNTD ASSFHLQRGW  360
DEMPFDRRPR IENTASETVR IQVPHGPANA SEHPLLWSGA NSSFFSIYKE KAMEKRMEVE  420
SSPCWPSQTC GPFGGATQVP LFSAAASSGF PSTTTSYPSA AVGQLHLPNT TIHPPPFFAI  480
NHPHYHHVPF PLQELKSVPG RT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:17144896, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250\|UniProtKB:P47927, ECO:0000250\|UniProtKB:Q84TB5}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:20017947, ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807836.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like
Swissprot	B8AMA9	1e-100	AP22_ORYSI; APETALA2-like protein 2
Swissprot	Q8H443	1e-100	AP23_ORYSJ; APETALA2-like protein 3
TrEMBL	A0A2I4DL11	0.0	A0A2I4DL11_JUGRE; ethylene-responsive transcription factor RAP2-7-like
STRING	POPTR_0006s13460.1	1e-169	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10581	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-103	related to AP2.7

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]