PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00017547-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 206aa MW: 23627.9 Da PI: 9.7375 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.8 | 1.7e-33 | 25 | 126 | 2 | 103 |
HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS HSF_DNA-bind 2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 Fl+k+y++le d++ k+++sw+++g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk+++++ weFkh WALNUT_00017547-RA 25 FLSKTYDLLEegradddhhDRAGKRIVSWNAEGTGFVVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSSKR---------WEFKH 106 9*********88887777767999*************************************************9998.........***** PP SXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 84 ksFkkgkkellekikrkkse 103 ++Fkkg +++l +i rkkse WALNUT_00017547-RA 107 EKFKKGCRQMLAEITRKKSE 126 *****************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.2E-34 | 16 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.7E-40 | 21 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.31E-26 | 22 | 123 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.3E-29 | 25 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MEQEGTSKST ASSSQSPRSR CPAPFLSKTY DLLEEGRADD DHHDRAGKRI VSWNAEGTGF 60 VVWSPAEFSE LLLPKYFKHN NFSSFIRQLN TYGFKKTSSK RWEFKHEKFK KGCRQMLAEI 120 TRKKSEPSIF PAYLKASEES SKMTAACMEE TNRLLLLKEN KDLRREKVEL QMQIAHFKAL 180 ELKLLDCLSQ YMGPGETTTR TKLGAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 4e-17 | 21 | 125 | 2 | 107 | Heat shock factor protein 2 |
5d8l_B | 4e-17 | 21 | 125 | 2 | 107 | Heat shock factor protein 2 |
5d8l_D | 4e-17 | 21 | 125 | 2 | 107 | Heat shock factor protein 2 |
5d8l_F | 4e-17 | 21 | 125 | 2 | 107 | Heat shock factor protein 2 |
5d8l_H | 4e-17 | 21 | 125 | 2 | 107 | Heat shock factor protein 2 |
5hdk_A | 4e-17 | 21 | 125 | 7 | 112 | Heat shock factor protein 2 |
5hdk_B | 4e-17 | 21 | 125 | 7 | 112 | Heat shock factor protein 2 |
5hdk_C | 4e-17 | 21 | 125 | 7 | 112 | Heat shock factor protein 2 |
5hdk_D | 4e-17 | 21 | 125 | 7 | 112 | Heat shock factor protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820155.1 | 1e-153 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A2I4EL76 | 1e-151 | A0A2I4EL76_JUGRE; heat stress transcription factor B-2a-like | ||||
STRING | EMJ13303 | 7e-97 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62020.1 | 3e-40 | heat shock transcription factor B2A |