PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017292-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 302aa    MW: 33994 Da    PI: 8.8734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017292-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  WALNUT_00017292-RA 57 YSCSFCRREFRSAQALGGHMNVH 79
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-65483No hitNo description
SMARTSM003550.00985779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDQAQYRMWA AKRKHCWNSH IQASTSPFYN NNSWEEQAFA EDAAGPLGGC IWPPRSYSCS  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQSP SSYNETLNQN HNHNSIQNSI TYPSQVCTLV  120
YNPNPNFADP GIMVSPSSPS RVSAPPTHEN FSAQAFNRPH ASAAVQEHQK RLRISSPPSW  180
SNLVADKYSY CISDLKTEEA KSSRFLESGY RPAKGDYVTT DLSVSMNLFV CRAHPTVPGG  240
MEEISTVGCK RKRTDQASTL PFFLKPRSVD RQYLHSKELG VSPNSIEDLD LELRLGDPPQ  300
VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125279229superman protein
2l1o_A1e-125279229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846278.10.0PREDICTED: uncharacterized protein LOC109010029
TrEMBLA0A2I4GQV00.0A0A2I4GQV0_JUGRE; uncharacterized protein LOC109010029
STRINGEOY074441e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-34zinc-finger protein 10