PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016724-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 387aa    MW: 43424 Da    PI: 6.2536
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016724-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29131192159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK++ ++++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  WALNUT_00016724-RA 131 LDDGFSWRKYGQKDILNAKYPRGYYRCTHRhvqGCLATKQVQRSDEDPTIFEITYRGRHTCS 192
                         59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.045126189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-29128193IPR003657WRKY domain
SuperFamilySSF1182904.32E-26130193IPR003657WRKY domain
SMARTSM007743.3E-42131193IPR003657WRKY domain
PfamPF031067.0E-27132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MENMGDWEQK NLINELTQGR ELARQLHSHL TTASSSHETR EFLVQKILAS YEKSLLMLRW  60
SSSVGEPQPI AGAVRNSESP PSQVGSPRSE DSDRDIRDLD HKSDAPRKRK ALPRWTQQVR  120
VSPGMGLEGP LDDGFSWRKY GQKDILNAKY PRGYYRCTHR HVQGCLATKQ VQRSDEDPTI  180
FEITYRGRHT CSQASNIMPP QASPEIVLQE PNDVMDLQHL NPQPQQQHDH HEPVLSQELM  240
LLNFQANLKV QTGNLDTHHA GQSFPSFIFP SSSTFEAADH HHHPTPEQQA HVFPASMIDN  300
NFVGSYSPSF MSPETSGTNY FSASPGGMNI TGFPADQQRH FQSSESELTE IISAATSATN  360
SPTVGLDFPF GPKFDPNFSF DNHGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21131191868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805181.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_018817372.10.0PREDICTED: probable WRKY transcription factor 53
RefseqXP_018852069.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2I4DDG80.0A0A2I4DDG8_JUGRE; probable WRKY transcription factor 53
STRINGPOPTR_0012s01380.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-58WRKY family protein