PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015537-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25884.8 Da PI: 5.0733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.5 | 2.6e-21 | 76 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+f+taeeAa +++a+ +l+g WALNUT_00015537-RA 76 KKFRGVRQRP-WGRWAAEIRDPV----RrKRVWLGTFDTAEEAASVYDKAAMELKG 126 59********.**********63....45************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.2E-67 | 1 | 225 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.44E-33 | 76 | 135 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 77 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-13 | 77 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 77 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 77 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.2E-39 | 77 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTSQPTLKLL RIIHTDADAT DSSSDEEEQR MVRRVKRHVQ EVRFEQPSIT TFKPQKQEPA 60 RKRTLRSTKS DITHRKKFRG VRQRPWGRWA AEIRDPVRRK RVWLGTFDTA EEAASVYDKA 120 AMELKGPNAV TNFPNPDVST EASVDVDSPK ESSSFSDAAA SPTSVLRYDE PTPLERFCYD 180 NVDVFGFDID VPLSFPDLVL SGKHFGQPEE EDFSDFDVNE FLVDGIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 76 | 134 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 76 | 134 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835693.1 | 1e-167 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like isoform X1 | ||||
Refseq | XP_018835694.1 | 1e-167 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like isoform X2 | ||||
Swissprot | O04682 | 2e-51 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A2I4FVL6 | 1e-165 | A0A2I4FVL6_JUGRE; pathogenesis-related genes transcriptional activator PTI6-like isoform X1 | ||||
TrEMBL | A0A2I4FVL7 | 1e-166 | A0A2I4FVL7_JUGRE; pathogenesis-related genes transcriptional activator PTI6-like isoform X2 | ||||
STRING | XP_008240070.1 | 8e-77 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-34 | cytokinin response factor 4 |