PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015152-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35618 Da PI: 7.7922 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 163 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rs edp+v++ tYegeHnh WALNUT_00015152-RA 163 VKDGYQWRKYGQKVTRDNPSPRAYFRCSYApNCPVKKKVQRSVEDPSVLVATYEGEHNHM 222 58***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 155 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 161 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-35 | 163 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-25 | 164 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.327 | 165 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESSSLQHTS LDLNLNPFRP MKEEVPKKEL AGVLARADDH QKEPIKEEAG FLAEEFDRIS 60 SENKKLTEML AHMRENYNAL QSHLMNLESN NSNKEYLVIP RKRKLADQRT DDPYGNIGVQ 120 GNIECSSCSD EESCKRPKEL SYSNAKVSRV CVRTDASNTN LAVKDGYQWR KYGQKVTRDN 180 PSPRAYFRCS YAPNCPVKKK VQRSVEDPSV LVATYEGEHN HMMHPSRAEL SLGSSQCANL 240 GSVSSVSSMR SSSRPTVTLD LIQTGLSEIS NKNSIEGVEG STFQQFLLQQ MASSLTRDPK 300 FTAALATAIS GRILDFTLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 163 | 225 | 14 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 104 | PRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00465 | DAP | Transfer from AT4G31800 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018839595.1 | 0.0 | PREDICTED: WRKY transcription factor 18-like | ||||
Swissprot | Q9C5T4 | 4e-81 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A2I4G6T3 | 0.0 | A0A2I4G6T3_JUGRE; WRKY transcription factor 18-like | ||||
STRING | EOY26052 | 1e-99 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-78 | WRKY DNA-binding protein 18 |