PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013184-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Trihelix | ||||||||
Protein Properties | Length: 453aa MW: 51599.6 Da PI: 5.243 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.3 | 8.7e-23 | 122 | 218 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt++ v++Li++++ ++++ + +kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ WALNUT_00013184-RA 122 KWTDDVVRLLIAVVSCVGDDGTLEGgeglkrksgilQKKGKWKTVSKIMMSKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENP 212 7**************666665532113455566888**********************************************569999999 PP trihelix 80 pyfdql 85 ++ d++ WALNUT_00013184-RA 213 ALMDSM 218 888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-19 | 120 | 245 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MDSSGLGGGF MSSPNGAILD LESSIHRHQQ TQLGHPSLRH QHHMNLMSGL ESDHHPPVGL 60 MEEKGTVMKC MSMNFSKGKA IAPANAPNSN NMSEEDEPSF TEDGYGDNVD GGKRGSPWQR 120 MKWTDDVVRL LIAVVSCVGD DGTLEGGEGL KRKSGILQKK GKWKTVSKIM MSKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPQ LSAKAKDDVK KILSSKHLFY 240 KEMCAYHNGQ RIPNCEDLDL QGHSLPLGRC SKDNTGSEEE AEENNDSEDD EIDNDDDNNA 300 EGDVERMGEF SGREKVSEED GHFWSQSVAL DNFEAEIAEI FEDPTKSLWE RREWIKRQML 360 QLEEQRVNFQ AEAFELEKQR FKWLRYCSKK DRELERLRLE NERMKLENER SVLQLRQKEL 420 EIDLRRSEAS IGPTSVGIDR LQGRDHIDLS RRQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830974.1 | 0.0 | PREDICTED: uncharacterized protein LOC108998738 | ||||
TrEMBL | A0A2I4FH56 | 0.0 | A0A2I4FH56_JUGRE; uncharacterized protein LOC108998738 | ||||
STRING | XP_010102326.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-78 | sequence-specific DNA binding transcription factors |