PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013162-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YA
Protein Properties Length: 319aa    MW: 34727 Da    PI: 7.1962
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013162-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.4e-32190246158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k+rkpylheSRh+hA+rR+RgsgGrF
  WALNUT_00013162-RA 190 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKARKPYLHESRHQHAMRRARGSGGRF 246
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.0E-36188249IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414189249IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-28191246IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.6E-24192214IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860194214IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.6E-24223246IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGNKGTFTSI RNSGGMQSKS ENANRLDLGS HAIPPSSVYP EPWWRNIGYN PISPAVTGGN  60
VSNSSSLECP NARSDSNDGH SLSNNELNEE DDDATKESQN TTYSRSAGNY GQEHQNVQHV  120
TSTAPSMRDE CLTQPAQLEL VGHSIACASN PYQDPYYGGM MAAYGHQPYG YPPFLGMPHA  180
RMPLPLEMAQ EPVYVNAKQY QGILRRRQAR AKAELEKKLI KARKPYLHES RHQHAMRRAR  240
GSGGRFAKKG DVDSSNHDAK EKGIGSGPAL SSQSASSSGS EPLLTDSAET WNSSHGQQGG  300
RHDASEAQNY FLGVQFSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19190254266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830923.10.0PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_018830924.10.0PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1
SwissprotQ9LXV59e-90NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A2I4FH060.0A0A2I4FH06_JUGRE; nuclear transcription factor Y subunit A-1 isoform X1
STRINGEOY326831e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.33e-72nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]