PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012936-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | DBB | ||||||||
Protein Properties | Length: 293aa MW: 32607.6 Da PI: 5.9926 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.5 | 2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C +++ e++ fC ++ lC C ++H+ Ht+ WALNUT_00012936-RA 4 QCGVCHKGEATVFCPADEAALCYGCDNSIHHAnklagkHTR 44 7******88********************744478888875 PP | |||||||
2 | zf-B_box | 28.1 | 4.1e-09 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e ++C+ ++e ++ lfC++++ lC++C + +Hk Ht WALNUT_00012936-RA 54 ELPICDICQERRAFLFCKEDRAILCRECDVPIHKAneHT 92 6799*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.983 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.34E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.253 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.9E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.78E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKIQCGVCHK GEATVFCPAD EAALCYGCDN SIHHANKLAG KHTRFSLIHP SLEELPICDI 60 CQERRAFLFC KEDRAILCRE CDVPIHKANE HTQKHDRFLL TGVKLHASSS LYPTPTSSNG 120 SEANIDTEIR SPESSSRKRP DTFPNELFLS SPSGNANPTA SKVEENQIND STASISTSSI 180 SEYLMETLPG WRVEDLLDPA FPANGFCKSF DQSLPLVDQD LERNMGSFPS EDSGIWIPQV 240 LPQFHLFPQA DFLNGFKESA KTTDVKVSSQ KWSDDGFTVP QISPPSKKSR RFR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815283.1 | 0.0 | PREDICTED: B-box zinc finger protein 20-like isoform X1 | ||||
Swissprot | Q9LQZ7 | 6e-79 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2I4E7A5 | 0.0 | A0A2I4E7A5_JUGRE; B-box zinc finger protein 20-like isoform X1 | ||||
STRING | VIT_18s0001g13520.t01 | 1e-102 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-75 | salt tolerance homolog2 |