PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012114-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 49322 Da PI: 8.4604 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 37 | 63 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p WALNUT_00012114-RA 37 PGEPDCSYYIRTGLCRFGATCRFNHPP 63 5789*********************97 PP | |||||||
2 | zf-CCCH | 32.3 | 1.7e-10 | 110 | 129 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ WALNUT_00012114-RA 110 YYLKTGTCKFGATCKFHHPR 129 9*****************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.2e-12 | 151 | 175 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+Ck+G++CkF+H++ WALNUT_00012114-RA 151 EAQCSYYLRTGQCKFGSTCKFHHPQ 175 578********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ WALNUT_00012114-RA 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336 5789*********************96 PP | |||||||
5 | zf-CCCH | 39.7 | 8.3e-13 | 357 | 382 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ WALNUT_00012114-RA 357 GEPLCIFYSRYGICKFGPSCKFDHPM 382 789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.587 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 41 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 42 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.022 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-5 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.554 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-5 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-10 | 151 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 154 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 313 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 355 | 383 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 357 | 382 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 358 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 360 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MVVYAMYLFI NLISDAMWQM NLISSEMMDS GLYPERPGEP DCSYYIRTGL CRFGATCRFN 60 HPPNRKLAIA TARMKGDFPE RVGQPECQAW DVRYSIFLVQ FGQLIYCFDY YLKTGTCKFG 120 ATCKFHHPRD KAGVAGRVTL NILGYPLRPN EAQCSYYLRT GQCKFGSTCK FHHPQPTNMM 180 VSLSGSPVYP TMQSPTTPGQ QSYPGGISNW SRASFIPSPR WQGPSSYAPL LLPQGVVSVP 240 GWNAYSGELG SVSSPETQQQ TVGNSQIYGT SRQGESANAG PQGTFSPLRS SSVPAGFYAL 300 QGENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PTPDCVLSPL GLPLRQGEPL 360 CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS ASSSGDAPVR RLLGSSSGTA ALNLSSEGLV 420 QAGSAKPRRL SLSETRQMPS GDDNIDTEG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812187.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2I4DYG3 | 0.0 | A0A2I4DYG3_JUGRE; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008218439.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-178 | zinc finger protein 1 |