PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010978-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 46797 Da PI: 5.8942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 222 | 273 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ WALNUT_00010978-RA 222 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIIGGAIDFVKELE 273 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.98E-13 | 220 | 275 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-16 | 221 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.758 | 221 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-11 | 222 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-14 | 222 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-8 | 227 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MEIQGESPQL SVPAAGQNCH CQPIMPNWDL YFEEHPNATC VEPEFFTTES LKFDEFEEQQ 60 YFSIPMLEDN MPFLQMLQSV GPPRFLPIKE PSFQTLLRLQ HLKKPWDGYS YIPEMETQIQ 120 SLEFESCITN DIVELHSPVK SETMDLQHSR LEGGSSDCNQ DQPSSTENHC IEGTSASPPP 180 WANPQAWPKQ ITHFPKSLPV TRERRKRKRI RPTKNKEDVE SQRMTHIAVE RNRRRQMNDH 240 LNVLRSLMPT SYIQRGDQAS IIGGAIDFVK ELEQLFHSLE AKKRMRKTQQ GAEAFPPSGL 300 LTSPQSVIGS EEGHCGEGVK AENKSDVAEI KVTVIQTHVN LKIQGQRRPG QLLKTIVALE 360 ELRLTVLHLN ITSSEDSVFY SLNLKIEEEC KLGSANEIAS AVHRILSFID GS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | RRKRKR |
2 | 222 | 233 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822760.1 | 0.0 | PREDICTED: transcription factor bHLH67-like isoform X1 | ||||
TrEMBL | A0A2I4ETP6 | 0.0 | A0A2I4ETP6_JUGRE; transcription factor bHLH67-like isoform X1 | ||||
STRING | EMJ19239 | 1e-153 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-81 | bHLH family protein |