PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009567-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 326aa MW: 38288 Da PI: 9.4374

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009567-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.7	1.6e-23	45	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 +W++qe+++ i++r e+e + ++ + +lWe vs +m+erg++r+p+qCk+kw+nl +ryk ++ e + ++ WALNUT_00009567-RA 45 QWSQQETREFIAIRAEVEMERDLTAatnantisgvpnsgkrsKTTALWEVVSGRMSERGYKRTPEQCKCKWKNLLNRYKLVQGKETSD-PD 134 7************7666655322235667777777787778899************************************96.99 PP trihelix 75 ssstcpyfdqlea 87 ++++cp+fdql+a WALNUT_00009567-RA 135 NVRQCPFFDQLHA 147 999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0025	42	121	IPR001005	SANT/Myb domain
Pfam	PF13837	4.2E-21	44	147	No hit	No description
CDD	cd12203	1.78E-17	44	123	No hit	No description
PROSITE profile	PS50090	6.899	46	119	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MFGGRADVEG LGRMNMMKSV TLLNPNPNPK PPLERVGPQT PTQPQWSQQE TREFIAIRAE 60 VEMERDLTAA TNANTISGVP NSGKRSKTTA LWEVVSGRMS ERGYKRTPEQ CKCKWKNLLN 120 RYKLVQGKET SDPDNVRQCP FFDQLHAVFT ERAKNMQRLL LESEAGSSQA KKSFKRSTGD 180 RSSDEISDEE DEDEYDSEGE RPAKSNSRRR KAERLTLDKP SRATNMGHAS TSKNSDIQEL 240 LKEFFQQQHR MEMQWREMME RRVQERVFFE QEWRQTMAKL ERERIMAEQT WREREEQRRM 300 REETRAERRD ALLTTLLNKL LHENNL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833766.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like isoform X1
TrEMBL	A0A2I4FQ46	0.0	A0A2I4FQ46_JUGRE; trihelix transcription factor GT-3b-like isoform X1
STRING	GLYMA01G35370.2	1e-115	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	6e-17	Trihelix family protein