PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008333-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 299aa    MW: 32979.8 Da    PI: 8.5827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008333-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067175197123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k+F++   L  H  +H
  WALNUT_00008333-RA 175 FSCETCSKVFRSYQALGGHKASH 197
                         89**********99999888877 PP
2zf-C2H2140.00014230252123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C+k+F +   L  H ++H
  WALNUT_00008333-RA 230 FECPYCSKVFESGQALGGHKKVH 252
                         89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-7175197No hitNo description
SMARTSM003550.11175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637175202IPR007087Zinc finger, C2H2
PfamPF139128.3E-11175199IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576674.16E-7225252No hitNo description
PROSITE profilePS5015710.388230252IPR007087Zinc finger, C2H2
SMARTSM003550.018230252IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11230253IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGGHMRSHLA KLPIPPKPVQ QHDNSAAAES TQPSPSPSSS SSLHFHSRKN PMQSYPSLKR  60
RLHLVANSGS ESDAESQVPA KKPTRRRSKR CRKTVVPLAE SPLEPEQVSS VSDTFSEEDG  120
ALCLIMLSRD KGSTKGKEKA QEVVEGIVDD HKDEDHEGTD NYPCHIRTSR PRVKFSCETC  180
SKVFRSYQAL GGHKASHKKN KNQFHEEDFK EGNGHRISSH GGCVVDQRQF ECPYCSKVFE  240
SGQALGGHKK VHLSNLGNAR NATKPRHKLI DLNLPAPVDE DEVNGQLVDL SSTVPNADQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840981.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2I4GAR20.0A0A2I4GAR2_JUGRE; zinc finger protein ZAT4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-39C2H2-like zinc finger protein