PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008189-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 328aa    MW: 36869.6 Da    PI: 7.0049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008189-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33178235259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  WALNUT_00008189-RA 178 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYQDPTVVITTYEGQHNHP 235
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-35162237IPR003657WRKY domain
SuperFamilySSF1182901.16E-29169237IPR003657WRKY domain
PROSITE profilePS5081132.833172237IPR003657WRKY domain
SMARTSM007741.4E-38177236IPR003657WRKY domain
PfamPF031065.3E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSDEPKDLFY HYLFQDNQHL ESGTGSSYNE KPSYNNYSQG FDDDPSNYIM SSFNDQSLER  60
PVVYNSMASA FGLSRPPSSS QVFASVESNP KPREVGDLGG GSGDVIVTAN SSISSSSTEA  120
GAEEDSDHKS SKDRQPKELE DGGESSKKVP SKAKKKGEKK QREPRFAFMT KSEVDHLEDG  180
YRWRKYGQKA VKNSPYPRSY YRCTTQKCTV KKRVERSYQD PTVVITTYEG QHNHPIPATL  240
RGSSTAAAAI FSPYCMFTQP TAAARPVPTF PQHYFATHAQ IMPAQTMNSQ HHEQNPPNNP  300
HHDHQLPDYG LLQDIIPSMF LKQYNYEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29167238778Probable WRKY transcription factor 4
2lex_A1e-29167238778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819655.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A2I4EJT40.0A0A2I4EJT4_JUGRE; probable WRKY transcription factor 71
STRINGXP_009353824.18e-98(Pyrus x bretschneideri)
STRINGXP_009360850.18e-98(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-62WRKY DNA-binding protein 28