PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005764-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 270aa    MW: 30371.8 Da    PI: 6.2696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005764-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-21118167255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +grW+AeIrdp   ++rkr++lg+f+taeeAa  +++a+ +l+g
  WALNUT_00005764-RA 118 KFRGVRQRP-WGRWAAEIRDP---NRRKRVWLGTFDTAEEAASVYDKAAVQLKG 167
                         89*******.**********8...335**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.1E-7115268IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003804.1E-39118181IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22118176IPR016177DNA-binding domain
CDDcd000183.14E-32118176No hitNo description
PfamPF008471.4E-13118167IPR001471AP2/ERF domain
PROSITE profilePS5103224.25118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31118176IPR001471AP2/ERF domain
PRINTSPR003671.5E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.5E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MIGSDENSFY HHRAGMSLKF SEHILTTKST NFTRERKAMA AGDSENKLKL VRIIQTDAEA  60
TDSSSDDEQG EKIVRRVKRL VRVVSFERPP LVFETQKKEP SRKRAPTSRA SVTTHRNKFR  120
GVRQRPWGRW AAEIRDPNRR KRVWLGTFDT AEEAASVYDK AAVQLKGPNA VTNFPNPVKT  180
ELAVDVDTPT TESPGSSDAA SSSPTSVLHN YDEPMPFDGL GYGDVDVFGF NIDVPFSWPD  240
FVVSRKHVNQ KEEEDFGEFD VDDFLADGVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20111176773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828500.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046825e-54PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2I4FA350.0A0A2I4FA35_JUGRE; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008240070.15e-75(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.16e-32cytokinin response factor 3