PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00004937-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 476aa MW: 53511.9 Da PI: 7.9635 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 117 | 138 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+r+H WALNUT_00004937-RA 117 RCRICNKDFPSMQSLFGHMRSH 138 6********************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 355 | 377 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+dCgksF++ L H ++H WALNUT_00004937-RA 355 YECSDCGKSFPTFQALGGHRSSH 377 99***********9999999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.679 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.5 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.2E-8 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0067 | 116 | 138 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 116 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.31E-8 | 117 | 138 | No hit | No description |
Pfam | PF13912 | 9.5E-8 | 117 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.31E-8 | 350 | 377 | No hit | No description |
SMART | SM00355 | 0.024 | 355 | 377 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.3E-10 | 355 | 378 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.258 | 355 | 382 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 357 | 377 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence Send to blast |
MDIDGQENQF EGENHVPIEE MEKLKELTFW GTILDNDDDQ DGKPKAIKES RQDTDHHLDL 60 RICDLCGKTF SGGKALGGHR RSHFQTKKAV GFSKNIKKRD VAGADLRMDY EMINGNRCRI 120 CNKDFPSMQS LFGHMRSHPE RSWRGIQPPI LPSRRNSISS SSTSDSVDDD HNITSTDKRM 180 APNVDLLKSL SNWSQTERRG RGNIGSAWAA EIIMSFSREK DSPIPKHSVS CMDQRVDPSA 240 VVVLEERRMK KLKTVSCTDQ RVDPSAVVEE QRMTNLKIHG SGTSGRKEDE EKKIAEGGMP 300 DKPSKDRYQI GQKKMNKKKI LKCWEETLMR NSDMEEDVDH DLIDRTQKAV PYSCYECSDC 360 GKSFPTFQAL GGHRSSHNKD KMQKSNASLH EAAPARDQEK TSANINHRSW PYRTGGVAET 420 PLNKGASPAE AKSTQSAAKI ASPKEASTST DQSGVRRLTM GFDLNKPHFM EDLEDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833024.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2I4FMY1 | 0.0 | A0A2I4FMY1_JUGRE; zinc finger protein ZAT4-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26940.1 | 4e-16 | C2H2 family protein |