PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00004088-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 41598 Da PI: 8.9621 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.9 | 8.6e-32 | 172 | 225 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ WALNUT_00004088-RA 172 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 225 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-15 | 169 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 170 | 226 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-23 | 172 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 173 | 224 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MFICSKPTIM IPPSPSLPDL SLQISPPLIS DFEAKKEVVI ISCDDGLGVV LARNKAALYS 60 DRSSTTTDSG SSESDLSHEN GFLLHPDHQQ IMIRTTYNNN NNLRLSEAPM LSLGLKMADH 120 LSTPPLAKVL PRNHHHHRHH KHNHQPQIYG REFKRNNARL TGGTVKRSVR APRMRWTTTL 180 HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KGSGQERTHA 240 VLNPRSGLDL PSPHHHHNAN ILTLLQKSQR METSCGSSSR SSHHALAYFH DFEGNDAKVL 300 DGHDYINADS SLKEMMNCRL DDHSSNNISP LNTNLPNLEF TLGRPNWQMD SKNLIPDLKC 360 HNTTIMSTFT S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 173 | 227 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 173 | 227 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 173 | 227 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 173 | 227 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP283472 | 3e-65 | KP283472.1 Prunus armeniaca aberrant testa shape (ATS) gene, complete cds. | |||
GenBank | KP283473 | 3e-65 | KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821493.1 | 0.0 | PREDICTED: probable transcription factor KAN4 | ||||
Swissprot | Q9FJV5 | 4e-52 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | A0A2I4EQ27 | 0.0 | A0A2I4EQ27_JUGRE; probable transcription factor KAN4 | ||||
STRING | XP_006473404.1 | 9e-85 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4463 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.1 | 9e-52 | G2-like family protein |
Publications ? help Back to Top | |||
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