PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00003860-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | DBB | ||||||||
Protein Properties | Length: 298aa MW: 33475.6 Da PI: 6.7682 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.1 | 1.6e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +++ e++ fC ++ lC+ C ++H+ Ht+ WALNUT_00003860-RA 4 QCDVCNKGEATVFCPADEAALCDGCDGSIHHAnklagkHTR 44 7******88********************744478888875 PP | |||||||
2 | zf-B_box | 28.4 | 3.3e-09 | 53 | 91 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++e ++ lfC++++ lC++C l +Hk Ht WALNUT_00003860-RA 53 QAPLCDICQERRAFLFCKEDRAILCRECDLPIHKAneHT 91 7899*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.47E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.58 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-7 | 53 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.71E-11 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MKIQCDVCNK GEATVFCPAD EAALCDGCDG SIHHANKLAG KHTRFSLIHP SKQAPLCDIC 60 QERRAFLFCK EDRAILCREC DLPIHKANEH TQKHDRFLLT GVKLHDYSSS SLYPTSSSSN 120 GYESNNIDTD VRSSQSSRKR SPNMVCNEVF VSPSSGKSTI PPLGYRSGTE GNQIGDTDPI 180 STSSISEYLI ETLPGWRVED FLDPAFAANG FFKTNDQSLP FLDRVFLEKD MTSFSSEDLV 240 SWVSHQLPQL PLFPRTDFLT GFKESEKAND MKMSNRKWSD DGFTVPQIIP LKKSRRFR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841344.1 | 0.0 | PREDICTED: B-box zinc finger protein 20-like isoform X1 | ||||
Swissprot | Q9LQZ7 | 6e-73 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2I4GBQ4 | 0.0 | A0A2I4GBQ4_JUGRE; B-box zinc finger protein 20-like isoform X1 | ||||
STRING | POPTR_0004s16810.1 | 6e-99 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-71 | salt tolerance homolog2 |