PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001489-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 343aa    MW: 38148.4 Da    PI: 10.2779
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001489-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.36.3e-1649133186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v +L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ +  +  +      s++p++ +l+
  WALNUT_00001489-RA  49 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESSSTADA-----SSWPLYPRLD 133
                         5*************************************854444555566679**************99999974.....57****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2047133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDKEINQEIP SLLPNNNTTA TTKEDSPIRK PFAAAAAAAV SNDRLKRDEW SEGAVSTLLE  60
AYEAKWVLRN RAKLKGHDWE DVARHVSSRA NCTKSPKTQT QCKNKIESMK KRYRSESSST  120
ADASSWPLYP RLDLLLRGSG PLQAPPPPPL PPQPPPTPTP TPHPPPPNAP LMLLEPSPAA  180
VQPQPLPPPP PPPPQPGAAQ NSRGSNGIDR VAKEDEAGTK LSDQVSDKNR METDSSTPAL  240
YSDKEKTRSK RMKTKMEKKK RRRKEEMEIA ESIRWLAEVV VRSEQGRMET MREIERMRVE  300
AEAKRGEMDL KRTEILANTQ LEIARLFAGI GKGVDSSLRI GRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262KKKRRR
2257263KKKRRRK
3258263KKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818193.10.0PREDICTED: actin cytoskeleton-regulatory complex protein pan-1-like
TrEMBLA0A2I4EFM40.0A0A2I4EFM4_JUGRE; actin cytoskeleton-regulatory complex protein pan-1-like
STRINGXP_004307092.11e-155(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.17e-50sequence-specific DNA binding transcription factors