PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g11090.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 280aa MW: 31735.3 Da PI: 8.4275

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g11090.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.8	1.4e-29	19	70	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrWtpeLH++Fv a+e LGG++kAtPk +l+lm+vkgLt++hvkSHLQ + Vradi11g11090.1 19 PRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQLF 70 8*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.536	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-27	15	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	17	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-22	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	5.1E-6	20	68	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGSCGREGVV RQYIRSKVPR LRWTPELHRC FVYAIETLGG HHKATPKLVL QLMDVKGLTI 60 SHVKSHLQLF FLFFKNNQMY RSMKGDSCRQ DKTSTQHRKQ HDDEVGDVGF HSCFKSIGKE 120 SDSQPSCSNF SLKRARIEKT SFLSGFPQCS QRICDAVPNP YTTFYDYLHS MAEQKGIKKI 180 CAGSILQTQP LSTTFLPMLP SQASDFLQVA YLNDKQALNE VEKSCRVEAE DEDMGGCELS 240 LSISLPQPHP SSQRNVAMNV RFCDEKPLHE FLRQQCLSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	20	70	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	20	70	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	20	70	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	20	70	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	20	70	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g11090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-74	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014519772.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A1S3VNK6	1e-180	A0A1S3VNK6_VIGRR; putative Myb family transcription factor At1g14600
STRING	XP_007153120.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-30	G2-like family protein