PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g05000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 41403.4 Da PI: 7.9926 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.3e-32 | 230 | 285 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v++Lt+++vkSHLQkYRl+ Vradi11g05000.1 230 KQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVDSLTNDEVKSHLQKYRLH 285 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.02 | 227 | 287 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-29 | 228 | 288 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-18 | 228 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-26 | 230 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-7 | 232 | 283 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MVVCDLWEHT LAHRKSPHPT QQHSSAFMEL SLDLSLGFVP KPISLFFADV SANRNNTDKV 60 ATLDGFVQRL EDELRKVEAF KRELPLCMLL LNDAIARLKE EKVKCSVLQD PPTSEQFVPP 120 KTNSGGSENE KCEKKNWMSS AQLWSTQKIK STNEDGDRSV PQNPINGNLC APRKEGSQIP 180 SFSLMGHGSE LSHSNSKSVC GDTSSGSSLL RVEVQSQPQP PQHMQQNPRK QRRCWSPELH 240 RRFVDALQQL GGAQVATPKQ IRELMQVDSL TNDEVKSHLQ KYRLHVRRFP VSSVGQADNG 300 SWMGQDQCGN KSKGNLSQSG SPQGPLTPLL LGGGGSAKGI SSPGRNSVDA EDEQSDCRNW 360 KGGLHQHLEA DNQSL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g05000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-154 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519923.2 | 0.0 | transcription factor HHO5 | ||||
TrEMBL | A0A1S3VNG3 | 0.0 | A0A1S3VNG3_VIGRR; transcription factor HHO5 | ||||
STRING | XP_007156835.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 3e-58 | G2-like family protein |