PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 255aa    MW: 27829.5 Da    PI: 10.1104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.6e-32182239359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Vradi11g04520.1 182 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 239
                      99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-16132178IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33168239IPR003657WRKY domain
PROSITE profilePS5081130.894175241IPR003657WRKY domain
SuperFamilySSF1182902.48E-27177240IPR003657WRKY domain
SMARTSM007742.1E-38180240IPR003657WRKY domain
PfamPF031061.9E-27182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MPVELMMGYR NDSFAEENAV REAATGHARF RRAPVPPPPP SEPRFYRATP LQQIPPPPEH  60
PFIPKNAPIE TKDSSKTINF SYSNSFVSSL TGDTDTKQPS SSSPAAATPF QITNLSQVSS  120
AGKPPISSSS LKRKCSSDNL GSAKCGSSSS RCHCSKKSRK MRLKRVVRVP AISLKMADIP  180
PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPSMLVV TYEGEHNHTL  240
SAVEATTNLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-221772421478Probable WRKY transcription factor 4
2lex_A4e-221772421478Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g04520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521440.11e-169probable WRKY transcription factor 15 isoform X1
SwissprotO221766e-71WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A1S3VT091e-168A0A1S3VT09_VIGRR; probable WRKY transcription factor 15 isoform X1
STRINGXP_007156770.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-51WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]