PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 343aa    MW: 37217.4 Da    PI: 10.2325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-194893147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Vradi11g04420.1 48 KGPWSPEEDDALQNLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 93
                     79******************************.***********985 PP
2Myb_DNA-binding569.1e-18102144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  Vradi11g04420.1 102 AFTPEEDDTIVRAHARFGNK-WATIARLLQ-GRTDNAIKNHWNST 144
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.4124398IPR017930Myb domain
SuperFamilySSF466894.12E-3245141IPR009057Homeodomain-like
SMARTSM007172.6E-174796IPR001005SANT/Myb domain
PfamPF002494.9E-194893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2649101IPR009057Homeodomain-like
CDDcd001671.73E-165092No hitNo description
SMARTSM007172.6E-1499147IPR001005SANT/Myb domain
PROSITE profilePS5129421.241100149IPR017930Myb domain
CDDcd001671.58E-11102145No hitNo description
Gene3DG3DSA:1.10.10.605.6E-23102148IPR009057Homeodomain-like
PfamPF002493.2E-15102144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRGKPKKRSL SSVNGSTSEG DACPMTAVSQ IPSQPLPWKK RKDMDRIKGP WSPEEDDALQ  60
NLVEKHGPRN WSLISKSIPG RSGKSCRLRW CNQLSPQVEH RAFTPEEDDT IVRAHARFGN  120
KWATIARLLQ GRTDNAIKNH WNSTLKRKCA SSIMDDHLPP LKRSVSAGAA IPVSTGLYIN  180
PPTPGSPSGS DVSESSVPVA SPSHVFRPVP RTAVVLPPVE TTSSSNDPPT SLSLSLPGVD  240
SSEVSNRVTE SAHPVPPPQP SNTIPLLPMM TAPMSVVPQL KPPGLGAFNL SAEFLAVMQE  300
MIRKEVRSYM ERQNPNGMCF QAADDGFRNT SVKRIGISRV DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39471483104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-393814848158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-393814848158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-39471483104C-Myb DNA-Binding Domain
1msf_C2e-39471483104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g04420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521508.10.0transcription factor MYB44
SwissprotO231602e-99MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S3VT040.0A0A1S3VT04_VIGRR; transcription factor MYB44
STRINGXP_007156759.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-91myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]