PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g07380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 676aa    MW: 77806.5 Da    PI: 6.2539
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g07380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76.1e-2168159190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Vradi10g07380.1  68 EYYGNFARKNGFSIRKERSRISPQLG-TYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159
                      59********************8888.9*******************9**********************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-1968159IPR004330FAR1 DNA binding domain
PfamPF105517.0E-17291383IPR018289MULE transposase domain
PROSITE profilePS509669.878544579IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-7550575IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-5554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MTSIPSKNLC VRRQQCPCGD WKCYITYEGD SEEGSAAPEL VKEEKASSGA MITPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGTYKRDFV CYRSGFAPVK KKPNGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKMLEQ EKGIQGGQLP FLERDVRNFV QNRKKVVLEN EALLSEKREN  240
DVLELLEACK VMKEADDEFV YDFTVDGNDK VENVAWSYGD SVNVNAMFGD VVYFDTSYRS  300
VTYGLLFGVW FGIDSYGRTI FYGCVLLQDE TPQSFSWALQ TFVRFMRGRC PQTILTDLDP  360
GLRDAIISEF PGTKHVVPQW NILHKVPCWF SPTLGSRYAE FKSEFDALFH IENTEEFELQ  420
WSQMISVFGL GSDRHADLLY TVRASWAQAY VRGYFLARMA TITYSKSVDA FLKGIFSAHT  480
CLRSFFEQLK TCIPIEEHAR SILTPFAFNA LQQELMLAMQ YAASEMANGS YIVRHFKRMN  540
GERLVIWLVE DDQIHCSCKE FESSGILCRH ALRVFVIKNY FQLPDKYFLG RWRRECSLLV  600
VDDNNNNQGV GGEWFQEYQS LAETLFQESS ITKERSDYVR KELTKELNRI LNEVRNLPEA  660
DGVCLSMNMS VSPAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g07380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519143.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1S3VLA30.0A0A1S3VLA3_VIGRR; Uncharacterized protein
STRINGXP_007147626.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]