PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g07010.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 743aa MW: 81149.8 Da PI: 6.3756

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g07010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.9	9.4e-13	42	69	1	28
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 kprlrWt++LHerFv+av+qLGG+ k t Vradi10g07010.1 42 KPRLRWTQDLHERFVDAVTQLGGASKKT 69 79*********************99876 PP
2	G2-like	106.2	1.8e-33	462	516	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Vradi10g07010.1 462 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 516 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-11	39	69	IPR009057	Homeodomain-like
Pfam	PF14379	1.5E-6	249	269	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
PROSITE profile	PS51294	14.134	459	519	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	460	516	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-32	461	517	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-25	462	517	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-9	464	515	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-23	549	595	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MYPRLIHPHD GIVAQDDIQA AASNLSHSHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKKTC DSKERRSDEG VPYDSGLLSI AYLEVFMHRL SSISFPNEVV DVICRSYTKG 120 NHADHECQGS DSVSFEESSA GLFNSLNHAL PSLSYEPKMK PFFLNCRNTG LVSNLGKMLV 180 KDAKMIGCPP GLLICTETSL IYSKLFCHCL GFKLTSFMEG ISGSYLLESP GTENTSPKLP 240 TSDTNEGYEI KEALRAQMEV QSKLHLQVES YGIIRLLILS VIEASMTLQA EKHLQIRQDA 300 ERRYMAMLER ACKMLADQFI GATVIDTDSQ KFQAIGSKTP RGTLVDPLGF YSLPSAEVAG 360 VNVPDEEIAP SLPPQRADCS TESCLTSHES SGGLTLEGST GGGKRRMLGM DSMAAPLIWS 420 EAKMRTQAIN VAQGSHPQGI TSAMDPGNGG NSHSNNSNLT SKQRLRWTHE LHERFVDAVA 480 QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYL PDSSSDEGKK ADKKETGDVL 540 SNLDGSSGMQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRLSGVL 600 SEAPDTGVVA VVPGDVCQEP DNKTDPSTPD PEKAAKDRVP AKSLSMESFS SHHEPLTPDS 660 GCHVGSPADS PKGERSTKKQ RLNMDGSYSK PDMVLPLQIL ESSMSQYQHP STVFLGQEQF 720 DPSLGMSTRS GEELDKVGGS NL*

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MYPRLIHPHD GIVAQDDIQA AASNLSHSHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT  60
QLGGASKKTC DSKERRSDEG VPYDSGLLSI AYLEVFMHRL SSISFPNEVV DVICRSYTKG  120
NHADHECQGS DSVSFEESSA GLFNSLNHAL PSLSYEPKMK PFFLNCRNTG LVSNLGKMLV  180
KDAKMIGCPP GLLICTETSL IYSKLFCHCL GFKLTSFMEG ISGSYLLESP GTENTSPKLP  240
TSDTNEGYEI KEALRAQMEV QSKLHLQVES YGIIRLLILS VIEASMTLQA EKHLQIRQDA  300
ERRYMAMLER ACKMLADQFI GATVIDTDSQ KFQAIGSKTP RGTLVDPLGF YSLPSAEVAG  360
VNVPDEEIAP SLPPQRADCS TESCLTSHES SGGLTLEGST GGGKRRMLGM DSMAAPLIWS  420
EAKMRTQAIN VAQGSHPQGI TSAMDPGNGG NSHSNNSNLT SKQRLRWTHE LHERFVDAVA  480
QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYL PDSSSDEGKK ADKKETGDVL  540
SNLDGSSGMQ ITEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRLSGVL  600
SEAPDTGVVA VVPGDVCQEP DNKTDPSTPD PEKAAKDRVP AKSLSMESFS SHHEPLTPDS  660
GCHVGSPADS PKGERSTKKQ RLNMDGSYSK PDMVLPLQIL ESSMSQYQHP STVFLGQEQF  720
DPSLGMSTRS GEELDKVGGS NL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	462	519	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	462	519	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	462	519	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	462	519	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	462	519	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g07010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU500763	0.0	EU500763.1 Phaseolus vulgaris phosphate high response (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014210.1	0.0	uncharacterized protein LOC8283331
TrEMBL	A0A4D6KL56	0.0	A0A4D6KL56_VIGUN; Two-component response regulator ARR-B family
STRING	XP_010059710.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-98	G2-like family protein