PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g03400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 42262.5 Da PI: 8.9649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 147 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + +L++H+ + H Vradi10g03400.1 147 FPCTACGEIFQKPNLLETHQTLkH 170 89******************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.64 | 147 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 149 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 6.0E-6 | 173 | 290 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 9.59E-15 | 174 | 384 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.8E-6 | 320 | 384 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MASSIATFFN KFLYLLILFV HLGCFIFTTT AGGKKAPPSK KRKISPSSQP SSPSHPKFKT 60 HKALSSSWHF IKHLLSTKSC KTPKTATSQL SPQSTAATST ISVSAAAAHS LVSLTQPDPE 120 RKPPGSCPES DISADTNIFF PLRNDIFPCT ACGEIFQKPN LLETHQTLKH AVSDLSGSDP 180 GHNIVQIIFK SGWPESKPSP TITRILKIHN SPKILAKFEE YREVVKSKAA RHGALTRRRD 240 ERCIADGNEL MRFHCSTFLC DLGHSGDSSI CSQQFCNICG IIKSGFSPKL DGIATLSTSW 300 RAHVAIPDDV EREFRFMNVK RAMLVCRVIA GRVGSDSDDA EKADGGFDSV MARSETGVYT 360 RLDEEELLVF NPRAVLPCFV IVYTV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g03400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516996.1 | 0.0 | uncharacterized protein LOC106774494 | ||||
TrEMBL | A0A1S3VF65 | 0.0 | A0A1S3VF65_VIGRR; uncharacterized protein LOC106774494 | ||||
STRING | XP_007146728.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-107 | C2H2 family protein |