PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 386aa    MW: 42262.5 Da    PI: 8.9649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045147170123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg+ F  + +L++H+ + H
  Vradi10g03400.1 147 FPCTACGEIFQKPNLLETHQTLkH 170
                      89******************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64147171IPR007087Zinc finger, C2H2
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.106.0E-6173290IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563999.59E-15174384No hitNo description
Gene3DG3DSA:3.90.228.104.8E-6320384IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASSIATFFN KFLYLLILFV HLGCFIFTTT AGGKKAPPSK KRKISPSSQP SSPSHPKFKT  60
HKALSSSWHF IKHLLSTKSC KTPKTATSQL SPQSTAATST ISVSAAAAHS LVSLTQPDPE  120
RKPPGSCPES DISADTNIFF PLRNDIFPCT ACGEIFQKPN LLETHQTLKH AVSDLSGSDP  180
GHNIVQIIFK SGWPESKPSP TITRILKIHN SPKILAKFEE YREVVKSKAA RHGALTRRRD  240
ERCIADGNEL MRFHCSTFLC DLGHSGDSSI CSQQFCNICG IIKSGFSPKL DGIATLSTSW  300
RAHVAIPDDV EREFRFMNVK RAMLVCRVIA GRVGSDSDDA EKADGGFDSV MARSETGVYT  360
RLDEEELLVF NPRAVLPCFV IVYTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516996.10.0uncharacterized protein LOC106774494
TrEMBLA0A1S3VF650.0A0A1S3VF65_VIGRR; uncharacterized protein LOC106774494
STRINGXP_007146728.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-107C2H2 family protein