PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g07350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 313aa    MW: 35708.8 Da    PI: 10.1166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g07350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-18110156148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  lv++v+++G + W+ Ia+ m  gR +kqc++rw+++l
  Vradi09g07350.1 110 KGQWTPEEDSALVELVNEFGAKKWSEIAKLMC-GRVGKQCRERWHNHL 156
                      799*****************************.*************97 PP
2Myb_DNA-binding55.21.6e-17177219145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W  eEd +l++a++++G++ W+ Ia++++ gRt++++k++w+
  Vradi09g07350.1 177 KESWNLEEDMILIKAHQEFGNR-WSEIAKRLP-GRTENSIKNHWN 219
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.293105160IPR017930Myb domain
SuperFamilySSF466893.29E-31107218IPR009057Homeodomain-like
SMARTSM007172.4E-16109158IPR001005SANT/Myb domain
PfamPF002494.2E-17110156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23110159IPR009057Homeodomain-like
CDDcd001676.75E-15113156No hitNo description
PROSITE profilePS5129421.242172226IPR017930Myb domain
SMARTSM007172.5E-16176224IPR001005SANT/Myb domain
PfamPF002496.3E-16177219IPR001005SANT/Myb domain
CDDcd001673.77E-13179219No hitNo description
Gene3DG3DSA:1.10.10.603.2E-19179219IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDGSNSIVTP MYGIPTPSLG DGSFVNINSH QPVMLAPKNN SKIEEGKIIW DFSQKTMVHP  60
FETSSPMSPS SPFCLSNEYG LGMSEFHSDT YRRMVEMEKN TNNATHNIIK GQWTPEEDSA  120
LVELVNEFGA KKWSEIAKLM CGRVGKQCRE RWHNHLRPNI RVFLPSILIN IYIQLLKESW  180
NLEEDMILIK AHQEFGNRWS EIAKRLPGRT ENSIKNHWNG TKRRQSCRSY NGNKKNPYEG  240
SMLRAYVKRV TATEESTKVL KKPRSKNSKN GIATLLRFDP STNDMFFISN YAPLQVKSNN  300
VGKNAITRGM KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-391082252104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-391082252104C-Myb DNA-Binding Domain
1msf_C4e-391082252104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g07350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-127AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515544.10.0transcription factor MYB115-like
TrEMBLA0A1S3VBN30.0A0A1S3VBN3_VIGRR; transcription factor MYB115-like
STRINGGLYMA03G15870.21e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-52myb domain protein 118