PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi08g21920.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 292aa MW: 31930.8 Da PI: 6.7607

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi08g21920.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.7e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Vradi08g21920.1 19 PRLRWTPELHRCFVHAIDSLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-31	15	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.901	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGSCGREGAV RQYIRSKVPR LRWTPELHRC FVHAIDSLGG HQKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRGDLGRQ GRTQSQHRNQ SFEEHDDGCV DEVNDVCVEY SCSKAMGIES 120 DSFFGHSNLP PKRARIETRS SISESLQCSQ RLCDAVPNPY CFYDYLQKPM AEHKGIKEFS 180 QLLGSRCVLN GKPLVTTLNE GKSSGKGVNV DVNTETGEAE VEDVGGYELS LSLTLPNPSP 240 QRSNCSCSGS EISETISSCP AAGFSNYKDC STSSNLNETI NLDLSLALSG N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi08g21920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098225	0.0	BT098225.1 Soybean clone JCVI-FLGm-16F9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014512425.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1
TrEMBL	A0A1S3V2A0	0.0	A0A1S3V2A0_VIGRR; protein PHOSPHATE STARVATION RESPONSE 1
STRING	XP_007142823.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	6e-36	G2-like family protein