PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g16570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28824.6 Da PI: 6.6705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.4e-10 | 2 | 36 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++v+ +G g W+ +++ g++R++k+c++rw++yl Vradi08g16570.1 2 NYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYL 36 68*******************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 42 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl Vradi08g16570.1 42 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 87 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.228 | 1 | 36 | IPR017930 | Myb domain |
CDD | cd00167 | 9.36E-5 | 2 | 36 | No hit | No description |
SuperFamily | SSF46689 | 1.71E-22 | 2 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 2 | 36 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 5.3 | 2 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 2 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.067 | 37 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 42 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-25 | 44 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-11 | 46 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNYVQVHGEG KWRELSKRAG LKRCGKSCRL RWLNYLKPDI KRGNISSDEE DLIIRLHKLL 60 GNRWSLIAGR LPGRTDNEIK NYWNTYLRKK VEHKHNQNDN IPINLSSKSS LGDVLDPTKS 120 AHPMMIKPKS MRCTKVMMPG NDSVNTMNLI ATTWDHNPSA SMPQDEHNHC LTGVLQDFDI 180 GDFLMSYEDD CRFNGYACVE IPQHIFEDQT WRLDDSMVEA TWYENWKHDA YFSQEQDMDM 240 DMGFSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-21 | 1 | 91 | 39 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g16570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014511901.1 | 0.0 | transcription factor MYB8 | ||||
TrEMBL | A0A1S3V0N2 | 0.0 | A0A1S3V0N2_VIGRR; transcription factor MYB8 | ||||
STRING | XP_007143768.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15511 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-50 | MYB family protein |