PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g11300.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 165aa    MW: 18927.3 Da    PI: 8.2313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g11300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-104384955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r RR+ri ++f  L++++P        K++ +++Le+A++Y+k+L+
  Vradi08g11300.1 43 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKYLK 84
                     699*****************95.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3643483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-143995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-134087No hitNo description
Gene3DG3DSA:4.10.280.103.7E-124087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-84383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDYTHPASSD AASSSKTKRS KEKKGAKKCK GVRLSTDPQS VAARERRHRI SDRFKILQSM  60
VPGGSKMDTV SMLEEAIQYV KYLKTQIWLH QTMINFLDDN DSISPMYLTD FYFPSDPSEQ  120
FIFPQQNPPL DHNMHNFPHL PPPQCSFHGE DTTYFDSSFK YWPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KRSKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g11300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511795.11e-121transcription factor bHLH140
TrEMBLA0A1S3V0G11e-120A0A1S3V0G1_VIGRR; transcription factor bHLH140
STRINGXP_007134758.12e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-33APRATAXIN-like