PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g08860.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 278aa    MW: 30146.2 Da    PI: 5.6612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g08860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08127171554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el P+ +      K + a++L + v+Y+k L
  Vradi08g08860.1 127 HSIAERLRRERIAERIRALQELFPSvN------KTDRAAMLDEIVDYVKFL 171
                      99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-14120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13124181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6127171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MANHPSEPPT DDFLEQILGL PTFASADHAD ASPMMLQLNS GDAAFHAPPY QLGLSLEQGK  60
GGFLSPEDAS GSGNRFRDDV VDTRPKNIVM LQVFHGQPMP TTVPTAPHPP AVRPRVRARR  120
GQATDPHSIA ERLRRERIAE RIRALQELFP SVNKTDRAAM LDEIVDYVKF LRLQVKVLSM  180
SRLGGAGAVA PLVTDIPLSS VEEEGGEGRN QPAWEKWSND GTERQVAKLM EENVGAAMQF  240
LQSKALCIMP ISLASAIYPS QPSDPSSIVK PETNPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g08860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-127AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415582.11e-180PREDICTED: transcription factor UNE12-like
SwissprotO227681e-124UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0L9TWY61e-179A0A0L9TWY6_PHAAN; Uncharacterized protein
STRINGXP_007144689.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]