PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g01130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 651aa    MW: 71137.6 Da    PI: 7.7934
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g01130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093583951954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Vradi08g01130.1 358 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 395
                      554459******************************88 PP
2BELL122.12.4e-39222293172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+kkakL+++l+eV++rY+qy++q+q+v ssFe+vag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Vradi08g01130.1 222 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQI 293
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-59152291IPR006563POX domain
PfamPF075261.1E-47157290IPR006563POX domain
PROSITE profilePS5007112.195336399IPR001356Homeobox domain
CDDcd000867.03E-12339400No hitNo description
SMARTSM003895.3E-9339403IPR001356Homeobox domain
SuperFamilySSF466898.13E-17340405IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-29342405IPR009057Homeodomain-like
PfamPF059202.6E-18356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MATYFQSNPK IQAGADGLQT LVLMNPDYVQ YSDAPPPSLG GNHLFLNSAT TVANNSSLLN  60
LPHAPSPHTQ QFVGVPLSAA TQEPPPSMPH DVSALHGFLP RMQYNLWNTI DPSTAARDAT  120
RASQGLSLSL HGEEVRPRSS SASGASNGGG MAGIQSVLLS SKFLRVTQEL LDEVVNVNSG  180
IKVEQGKLSL EKTKAVGEPS TAASGDGGEG CGKRSSELST TERQEIQMKK AKLINMLDEV  240
EQRYRQYHNQ MQIVTSSFEQ VAGIGSARTY TALALQTISK QFRCLKDAIT GQIRAANKSL  300
GEEDCFGAKV EGSRLKYVDH HLRQQRAIQQ LGMIHHNAWR PQRGLPERSV SVLRAWLFEH  360
FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEEMK EQELNGNGSE  420
EKSSKSGEDP AMKREKRPTS EIESKGSGSK KDVSNSIVST SPSTSAPVVG NVKNQSGFSF  480
MGSSELDGIT QGSPKKARNH EILLSPNRAS SMSMDVKSNE GNNEQQLSME ERQSRDGYSF  540
MGSQTNFTSG FGQYPMEEIG RFDAEQFTPR FSGNGVSLTL GLPHCDTLSG THQTFLPNQN  600
IQLGRGLDIG QPNQFGVLNN STSHSSAAFE SINMQNPKRF AAQLVLDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16345403563Homeobox protein Meis2
3k2a_B3e-16345403563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g01130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513829.10.0BEL1-like homeodomain protein 1
RefseqXP_014513830.10.0BEL1-like homeodomain protein 1
RefseqXP_014513831.10.0BEL1-like homeodomain protein 1
RefseqXP_022640328.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-170BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1S3V6R20.0A0A1S3V6R2_VIGRR; BEL1-like homeodomain protein 1
STRINGXP_007145789.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-135BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]