PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g31190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 224aa    MW: 24829.9 Da    PI: 8.4135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g31190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+++v+++G g+W++ ++  g+ R++k+c++rw +yl
  Vradi07g31190.1 14 KGAWSKEEDQILINYVNRHGEGNWSSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.97.5e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE  l+++ + +lG++ W+ Ia++++ gRt++++k++w++
  Vradi07g31190.1  67 KGNFTQEETNLIIHQHSLLGNK-WAQIAACLP-GRTDNEIKNYWNT 110
                      79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.684965IPR017930Myb domain
SuperFamilySSF466891.8E-3012108IPR009057Homeodomain-like
SMARTSM007177.9E-141363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-241568IPR009057Homeodomain-like
CDDcd001672.12E-121661No hitNo description
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.24366116IPR017930Myb domain
PfamPF002494.1E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2569115IPR009057Homeodomain-like
CDDcd001675.57E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRTPCKEKQ HLLKGAWSKE EDQILINYVN RHGEGNWSSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKKGNF TQEETNLIIH QHSLLGNKWA QIAACLPGRT DNEIKNYWNT KIKRKFYANG  120
IDPIRSDGYS TGDKGECSNN SSGVTIEEAH PQINLNLSLS PPPKPQDFCV NPEGLQPQGQ  180
QEEPALSARN VDGGKRGLCL WCSLGLQSNH ACGSKDKGNN DDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g31190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-132AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027922194.11e-125myb-related protein 308-like
SwissprotP813931e-67MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A4D6L8Q31e-124A0A4D6L8Q3_VIGUN; Myb proto-oncogene protein
STRINGXP_007159923.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-66myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]