PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g23190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 231aa    MW: 25176.1 Da    PI: 9.9503
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g23190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.8e-3376132158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Vradi07g23190.1  76 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALKRVRGSGGRF 132
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-3774135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.97175135IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-2878132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-2578100IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686080100IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-25109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKPFFLSNHP DTAMYNCSQV DFSHSMAHTP YPCGDPYFAS SIVAYGPQAI NQPQIIPQML  60
GLASTRIALP VELAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKSRK PYLHESRHRH  120
ALKRVRGSGG RFLSAKQLQE SNAEHVDNNS HSGQKKDASE VESHNSRTAE NASITFTAIS  180
GLTTMSSNSL NFRQPEHNFL GNSSNMGGSS QCSGGLTFGG GTRQCASVGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2376148271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116125RHRHALKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g23190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154608.11e-153hypothetical protein PHAVU_003G133100g
TrEMBLA0A0L9UY391e-168A0A0L9UY39_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8D31e-168A0A0S3R8D3_PHAAN; Uncharacterized protein
STRINGXP_007154608.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-39nuclear factor Y, subunit A5