PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g15410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 616aa    MW: 66806.6 Da    PI: 5.3242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g15410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.4e-30254313159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
  Vradi07g15410.1 254 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCVDDMSILITTYEGTHNHT 313
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.83E-26252315IPR003657WRKY domain
SMARTSM007741.8E-35254314IPR003657WRKY domain
PROSITE profilePS5081127.255254315IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-29254315IPR003657WRKY domain
PfamPF031064.0E-26255312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MELASERSGD GGGRLKEENR TDEYTVGDDE DGPRRQEIIL EEPPIEEAGP STSADKKEEV  60
DDELESTKSE MGVVREENER LKRSLQKIMN EYRTLEMQFQ DILKQGTKRK NGNEEDDTVE  120
ESDLVSLSLG RVPSHQRNEE KIKVYKTLKD DEGFNQELTL GLECKSKSRS TSEALPNPSP  180
ENSSENRKEE AGETQKAIRD TEDEVAQQNP MKKPRVCVRA RCDTPTVNLY SLTSFYLITL  240
FSQLSYSYLL FIQMNDGCQW RKYGQKIAKG NPCPRAYYRC TIAPSCPVRK QVQRCVDDMS  300
ILITTYEGTH NHTLPPSATA MASTTSAAAS MLLSGSSTSL SASAPSTTAP TSASNLHGLN  360
FYLSDGAKPR QLYLSNPALS SSPSHPTITL DLTSHPASSS SSPFVRFTSN YNQPRYPSSS  420
SLSFSNSSEI NALSWSNGFL TNNNTIQPTY NSRNILGNVN FGRQQVENIY QSYLQKNSSN  480
IPSVPQGGVP ADTISAATKV ITADPTFQSA LAAALTSFIG GGVRGNQGGN SVGENPSSGQ  540
NLKWGEVFAA SNNSSSTLSC STSKVNGCAS SFLNKTPANN TQTKSLVFLP PSSLPFSTPK  600
SASASSPADN SDTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21246316675WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g15410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508378.10.0probable WRKY transcription factor 61
TrEMBLA0A1S3UQM40.0A0A1S3UQM4_VIGRR; probable WRKY transcription factor 61
STRINGXP_007155330.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.16e-63WRKY DNA-binding protein 61