PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g14150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 321aa MW: 36040.8 Da PI: 6.5083 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 262 | 300 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Vradi06g14150.1 262 MFQNflHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVR 300 5887779******************************88 PP | |||||||
2 | BELL | 39.7 | 1.2e-13 | 157 | 201 | 25 | 70 |
BELL 25 qyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 q+ ++++tv+s+F+a+++l++ ++++++Al++iS ++ L+++i++ Vradi06g14150.1 157 QCLDEVHTVASAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 201 99*******************.**********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 0.0078 | 88 | 201 | IPR006563 | POX domain |
Pfam | PF07526 | 8.7E-9 | 156 | 200 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.321 | 241 | 304 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-11 | 244 | 305 | No hit | No description |
SMART | SM00389 | 2.0E-6 | 244 | 308 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-15 | 246 | 312 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-26 | 247 | 309 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.4E-16 | 261 | 300 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MENNMYSASL DIPGRNSAVI EEIAQHLAPK PLIQCYSFDL NNQNHIINGI PVLAAEQGEP 60 RSDVHVDGCF INQARIADSN SFVSIQGKSI VGDASNPINN SAIQEHLAGG RPIASDASLA 120 DRIGLQENLQ SSAALPHSMS SLEALGPYIF SNWQDTQCLD EVHTVASAFH AATELDPHMH 180 AHFALQTISL LYKDLRERIS NCIRAMGPDF NSLCSEEEKE WSLETSFIQK QWALQQLKKK 240 DQLWRPQRGL PERSVSVLRA WMFQNFLHPY PKDAEKHSLA VKSGLTRSQV SNWFINARVR 300 LWKPMIEEMR RYVILKDVLS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 250 | 311 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 250 | 311 | 5 | 66 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g14150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503926.1 | 1e-108 | homeobox protein ATH1 | ||||
Refseq | XP_017428422.1 | 1e-108 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428423.1 | 1e-108 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428424.1 | 1e-108 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428425.1 | 1e-108 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_017428426.1 | 1e-108 | PREDICTED: homeobox protein ATH1-like | ||||
Refseq | XP_022638224.1 | 1e-108 | homeobox protein ATH1 | ||||
Refseq | XP_022638225.1 | 1e-108 | homeobox protein ATH1 | ||||
TrEMBL | A0A0S3RPM4 | 1e-107 | A0A0S3RPM4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3UD30 | 1e-107 | A0A1S3UD30_VIGRR; homeobox protein ATH1 | ||||
STRING | XP_007160994.1 | 1e-105 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 5e-64 | homeobox gene 1 |