PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g13520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 269aa    MW: 30421.7 Da    PI: 8.7634
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g13520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28107165158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      ++Dgy+WrKYGqK+ k++  pr+Y+rC++a  Cp+kkkv+r+ +d+++++ tY geHnh
  Vradi06g13520.1 107 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApICPAKKKVQRCLHDKSILVATYDGEHNH 165
                      58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-28100166IPR003657WRKY domain
SuperFamilySSF1182902.75E-24101166IPR003657WRKY domain
PROSITE profilePS5081123.72102168IPR003657WRKY domain
SMARTSM007748.1E-32107167IPR003657WRKY domain
PfamPF031064.4E-23108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLVQVLNTAV IMDVKVETLK SELKRVREEN KTLRVMFEVL SSKYTKLESH LQEINKEQDK  60
GMSSNQIGSV TEPILDVNKR RRLEFHTAKK PLQIFVRTHP MDDSLIVKDG YQWRKYGQKV  120
TKDNASPRAY FRCSMAPICP AKKKVQRCLH DKSILVATYD GEHNHGALHE PSSSTPRGSS  180
VANQLPSVAN DKAMNILALS GLSQTDRRHG EEVIHQHNYD TNIKVEEYVS SLIKDPDFTM  240
SLAEAVARTI TGELKQQDLN LNLNIPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1993165271WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g13520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753490.0EU375349.1 Glycine max transcription factor (WRKY63) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504150.10.0probable WRKY transcription factor 40
TrEMBLA0A1S3UDN70.0A0A1S3UDN7_VIGRR; probable WRKY transcription factor 40
STRINGXP_007161093.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-45WRKY DNA-binding protein 40